Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 44251 | 0.66 | 0.731365 |
Target: 5'- -gCGCGGcCGacgccgcGGCGCGCgGGGGggCGGg -3' miRNA: 3'- uaGCGCCuGU-------UCGCGCGgCUCCa-GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 3346 | 0.66 | 0.732331 |
Target: 5'- -cCGCGG-CGcccGGCGCGCCGgccuucAGGgccgCGAg -3' miRNA: 3'- uaGCGCCuGU---UCGCGCGGC------UCCa---GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 87415 | 0.66 | 0.732331 |
Target: 5'- -cCGUcGACGGGCGCGCCGgcgaAGGcgcCGAa -3' miRNA: 3'- uaGCGcCUGUUCGCGCGGC----UCCa--GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 75192 | 0.66 | 0.732331 |
Target: 5'- uGUCGCGGACcuucauGGCG-GCCGcGGUggCGGc -3' miRNA: 3'- -UAGCGCCUGu-----UCGCgCGGCuCCA--GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 54638 | 0.66 | 0.732331 |
Target: 5'- -cCGCGuGAUGAGCGCGcCCGcGGUguuaaCGAa -3' miRNA: 3'- uaGCGC-CUGUUCGCGC-GGCuCCA-----GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 53871 | 0.66 | 0.732331 |
Target: 5'- -gCGCGG-CGcGCGCGCUGucGaGUCGAa -3' miRNA: 3'- uaGCGCCuGUuCGCGCGGCu-C-CAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 105123 | 0.66 | 0.732331 |
Target: 5'- -gCGCGGGCGcgggccgccGGCGCGCgcAGGUCc- -3' miRNA: 3'- uaGCGCCUGU---------UCGCGCGgcUCCAGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 6225 | 0.66 | 0.732331 |
Target: 5'- cUgGCGGucCAGGUGCGCCcGGGGagGGc -3' miRNA: 3'- uAgCGCCu-GUUCGCGCGG-CUCCagCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 105490 | 0.66 | 0.741947 |
Target: 5'- -gCGCGGGCcccGAGCcCGCCGAGa-CGAa -3' miRNA: 3'- uaGCGCCUG---UUCGcGCGGCUCcaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 75502 | 0.66 | 0.741947 |
Target: 5'- -gCGCgGGGCGcuggaGGCGCacGCCGuGGUCGc -3' miRNA: 3'- uaGCG-CCUGU-----UCGCG--CGGCuCCAGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 127831 | 0.66 | 0.741947 |
Target: 5'- cUCGCGGccGCGAGCaGCGgaCGGGG-CGGu -3' miRNA: 3'- uAGCGCC--UGUUCG-CGCg-GCUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 88210 | 0.66 | 0.75147 |
Target: 5'- -cCGCGccGGCAAGCGCgcgGCCGA-GUCGu -3' miRNA: 3'- uaGCGC--CUGUUCGCG---CGGCUcCAGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 73720 | 0.66 | 0.75147 |
Target: 5'- -cCGCGGuCGGcgugcgcgcuuGCGCGCgGGGGUCc- -3' miRNA: 3'- uaGCGCCuGUU-----------CGCGCGgCUCCAGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 67055 | 0.66 | 0.75147 |
Target: 5'- -cCGUGuaGGCGGGCGCGCgCGGGGgcucgcUCGGg -3' miRNA: 3'- uaGCGC--CUGUUCGCGCG-GCUCC------AGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 59101 | 0.66 | 0.75147 |
Target: 5'- cUCGCGcucGCAGGCGCGCgCGAGcUCc- -3' miRNA: 3'- uAGCGCc--UGUUCGCGCG-GCUCcAGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 33046 | 0.66 | 0.75147 |
Target: 5'- -cCGCGGAgggcCAGGacucgGCGCCGGGGacgCGGc -3' miRNA: 3'- uaGCGCCU----GUUCg----CGCGGCUCCa--GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 52680 | 0.66 | 0.75147 |
Target: 5'- --aGCGGGCccugcucgcGGGCGCGCCGcugccGGcCGAu -3' miRNA: 3'- uagCGCCUG---------UUCGCGCGGCu----CCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 56319 | 0.66 | 0.759954 |
Target: 5'- -cUGCuacuGACGAgccuggcGCGCGCCGAGGcCGGg -3' miRNA: 3'- uaGCGc---CUGUU-------CGCGCGGCUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 103428 | 0.66 | 0.760891 |
Target: 5'- -cCGCGGccacgcGCGcGCGCGCCucgcGGUCGGc -3' miRNA: 3'- uaGCGCC------UGUuCGCGCGGcu--CCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 107264 | 0.66 | 0.760891 |
Target: 5'- -gCGCGGGCAcgggcgGGCGCGCaucAGG-CGGc -3' miRNA: 3'- uaGCGCCUGU------UCGCGCGgc-UCCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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