miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 30791 0.67 0.693114
Target:  5'- --gGCGGugGAG-GUGCUGGGGcCGGa -3'
miRNA:   3'- uagCGCCugUUCgCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 94547 0.67 0.693114
Target:  5'- uUCGCcuuCAGGaGCGCCG-GGUCGAa -3'
miRNA:   3'- uAGCGccuGUUCgCGCGGCuCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 88474 0.67 0.693114
Target:  5'- --gGCGGGCcgugccgcgccgGAGCGCGCCGcGcUCGAc -3'
miRNA:   3'- uagCGCCUG------------UUCGCGCGGCuCcAGCU- -5'
23775 3' -59.5 NC_005261.1 + 92606 0.67 0.693114
Target:  5'- cUCGCGGc---GCGUGCCGGGGcccCGGg -3'
miRNA:   3'- uAGCGCCuguuCGCGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 63023 0.67 0.693114
Target:  5'- -gCGCGGGCGccGGCGC-CCGcGG-CGAg -3'
miRNA:   3'- uaGCGCCUGU--UCGCGcGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 48441 0.67 0.683166
Target:  5'- cUCGCGGuGCGuGGCGCGgCCGGcgcGGUCa- -3'
miRNA:   3'- uAGCGCC-UGU-UCGCGC-GGCU---CCAGcu -5'
23775 3' -59.5 NC_005261.1 + 59658 0.67 0.683166
Target:  5'- --gGCGGGCGAcuGCG-GCCGGGucGUCGAa -3'
miRNA:   3'- uagCGCCUGUU--CGCgCGGCUC--CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 68138 0.67 0.683166
Target:  5'- -gCGCGG-CGAcCGCGCCGuGGcCGGc -3'
miRNA:   3'- uaGCGCCuGUUcGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 79173 0.67 0.683166
Target:  5'- -cCGUGG-CcAGCGCGCCGaAGGgguucgCGAc -3'
miRNA:   3'- uaGCGCCuGuUCGCGCGGC-UCCa-----GCU- -5'
23775 3' -59.5 NC_005261.1 + 115626 0.67 0.683166
Target:  5'- cGUCGCGG-CAGcGCaGCGUCGGGGggaaGAg -3'
miRNA:   3'- -UAGCGCCuGUU-CG-CGCGGCUCCag--CU- -5'
23775 3' -59.5 NC_005261.1 + 132594 0.67 0.677176
Target:  5'- -cCGCGGACGcccggcccggcgAGCcgccagggggcgcugGCGCCGAGGacgCGGg -3'
miRNA:   3'- uaGCGCCUGU------------UCG---------------CGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 65590 0.67 0.673176
Target:  5'- -cCGCGaGCuccuGCuCGCCGGGGUCGGc -3'
miRNA:   3'- uaGCGCcUGuu--CGcGCGGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 43388 0.67 0.673176
Target:  5'- cUCGCGGuGCcGGCaccguccagGCGCCGGGGgCGGc -3'
miRNA:   3'- uAGCGCC-UGuUCG---------CGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 21485 0.67 0.663154
Target:  5'- uUC-CGGACGAGUGCuaCGAGGaUGAg -3'
miRNA:   3'- uAGcGCCUGUUCGCGcgGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 35464 0.67 0.653107
Target:  5'- -gCGCGGcGCGcGCGCGucCCGGGGUCc- -3'
miRNA:   3'- uaGCGCC-UGUuCGCGC--GGCUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 11475 0.67 0.653107
Target:  5'- -gCGCGGAgGGGCGgGgCGGGGgugccggcUCGAg -3'
miRNA:   3'- uaGCGCCUgUUCGCgCgGCUCC--------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 83665 0.68 0.647071
Target:  5'- --gGCGGACGcgcgccugggcgcgcAGCGCGCCgccGAGG-CGGc -3'
miRNA:   3'- uagCGCCUGU---------------UCGCGCGG---CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 33800 0.68 0.647071
Target:  5'- -gCGCGGGCGgcgggcuugucuuugGGCG-GCCGGGGggcgCGGg -3'
miRNA:   3'- uaGCGCCUGU---------------UCGCgCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 46814 0.68 0.643045
Target:  5'- -gCGCGGAuggcgcgcgcCAGGCGCGCgugcucgggaaCGAGGUgGGc -3'
miRNA:   3'- uaGCGCCU----------GUUCGCGCG-----------GCUCCAgCU- -5'
23775 3' -59.5 NC_005261.1 + 132054 0.68 0.632974
Target:  5'- -cCGgGGAgguGGCG-GCCGAGGUCGc -3'
miRNA:   3'- uaGCgCCUgu-UCGCgCGGCUCCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.