miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 104171 0.68 0.632974
Target:  5'- -cCGCGGGCGccGCGCGC--GGGUCGu -3'
miRNA:   3'- uaGCGCCUGUu-CGCGCGgcUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 31320 0.68 0.622902
Target:  5'- -cCGCGGGCGcgcucgccgccAGCGCGCCGcugcGG-CGGc -3'
miRNA:   3'- uaGCGCCUGU-----------UCGCGCGGCu---CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 96996 0.68 0.622902
Target:  5'- -gCGCGGcUAAGCGCGCCauuGGG-CGGg -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGc--UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 107351 0.68 0.622902
Target:  5'- cGUUGCGGACcuGCgucgucguggGCGCCGGGG-CGc -3'
miRNA:   3'- -UAGCGCCUGuuCG----------CGCGGCUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 12727 0.68 0.621895
Target:  5'- -gCGCGGGCccgccggcccccuGGGCGgGCCcggcGAGGUCGu -3'
miRNA:   3'- uaGCGCCUG-------------UUCGCgCGG----CUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 30354 0.68 0.621895
Target:  5'- cUCGCGGcccugaagGCcGGCGCGCCGggcgccgcggcgcGGGUgGAg -3'
miRNA:   3'- uAGCGCC--------UGuUCGCGCGGC-------------UCCAgCU- -5'
23775 3' -59.5 NC_005261.1 + 1143 0.68 0.616862
Target:  5'- -aCGCGGACGAggagagcacuuccacGCGCGCCGGcccgcgccgcGGcCGGg -3'
miRNA:   3'- uaGCGCCUGUU---------------CGCGCGGCU----------CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 69193 0.68 0.616862
Target:  5'- cGUCGCGGACGcggccaacgacGuccuccgggagcuguGCGCGCUGGGG-CGGu -3'
miRNA:   3'- -UAGCGCCUGU-----------U---------------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 57849 0.68 0.612838
Target:  5'- -gCGCGGGCGgcaaGGCcucgGCGCUcGGGUCGGg -3'
miRNA:   3'- uaGCGCCUGU----UCG----CGCGGcUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 31569 0.68 0.602787
Target:  5'- gGUCcUGGACGGGCGCGCCGGacgUGAg -3'
miRNA:   3'- -UAGcGCCUGUUCGCGCGGCUccaGCU- -5'
23775 3' -59.5 NC_005261.1 + 82055 0.68 0.602787
Target:  5'- -gCGCGGGCca-CGuCGCCG-GGUCGAc -3'
miRNA:   3'- uaGCGCCUGuucGC-GCGGCuCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 97407 0.68 0.602787
Target:  5'- -cCGCGGGCuuggcGGGCGCGCCG-GGcCu- -3'
miRNA:   3'- uaGCGCCUG-----UUCGCGCGGCuCCaGcu -5'
23775 3' -59.5 NC_005261.1 + 5572 0.68 0.592757
Target:  5'- --gGCGGAgaUggGgGCGCCGAGGgcgcccgccUCGAg -3'
miRNA:   3'- uagCGCCU--GuuCgCGCGGCUCC---------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 101293 0.69 0.582756
Target:  5'- -cCGCGGucguCGAuGCGCGCCGuuagcGGGUgCGAg -3'
miRNA:   3'- uaGCGCCu---GUU-CGCGCGGC-----UCCA-GCU- -5'
23775 3' -59.5 NC_005261.1 + 74417 0.69 0.582756
Target:  5'- -cCGCGGGCGGGaGgGCCGAGGa--- -3'
miRNA:   3'- uaGCGCCUGUUCgCgCGGCUCCagcu -5'
23775 3' -59.5 NC_005261.1 + 108903 0.69 0.582756
Target:  5'- -cCGCcGGCGAGCgGgGCgCGGGGUCGGg -3'
miRNA:   3'- uaGCGcCUGUUCG-CgCG-GCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 23714 0.69 0.572788
Target:  5'- gGUCGgGuGGCAAGCggguggccGCGCCGAGG-CGc -3'
miRNA:   3'- -UAGCgC-CUGUUCG--------CGCGGCUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 82663 0.69 0.572788
Target:  5'- -gCGCGGAUGAGCGCcucgaGCCGcucGUCGGg -3'
miRNA:   3'- uaGCGCCUGUUCGCG-----CGGCuc-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 129604 0.69 0.572788
Target:  5'- -aCGCGG-CAAuuuCGCGgCGGGGUCGGg -3'
miRNA:   3'- uaGCGCCuGUUc--GCGCgGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 30983 0.69 0.552982
Target:  5'- -cCGCGGcGCAAGCGCaagucgGCCGGGGcCa- -3'
miRNA:   3'- uaGCGCC-UGUUCGCG------CGGCUCCaGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.