miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 52249 0.67 0.702027
Target:  5'- uUCGUGGGaGGGCgcuguccGCGCCGGGGggCGGu -3'
miRNA:   3'- uAGCGCCUgUUCG-------CGCGGCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 52680 0.66 0.75147
Target:  5'- --aGCGGGCccugcucgcGGGCGCGCCGcugccGGcCGAu -3'
miRNA:   3'- uagCGCCUG---------UUCGCGCGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 53871 0.66 0.732331
Target:  5'- -gCGCGG-CGcGCGCGCUGucGaGUCGAa -3'
miRNA:   3'- uaGCGCCuGUuCGCGCGGCu-C-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 54330 0.72 0.388513
Target:  5'- -gCGUGGcCGAGCGCGUacAGGUCGAu -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGgcUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 54638 0.66 0.732331
Target:  5'- -cCGCGuGAUGAGCGCGcCCGcGGUguuaaCGAa -3'
miRNA:   3'- uaGCGC-CUGUUCGCGC-GGCuCCA-----GCU- -5'
23775 3' -59.5 NC_005261.1 + 56116 0.69 0.543154
Target:  5'- --aGCGGcGgGAGCGCGCCGcAGGgCGGg -3'
miRNA:   3'- uagCGCC-UgUUCGCGCGGC-UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 56319 0.66 0.759954
Target:  5'- -cUGCuacuGACGAgccuggcGCGCGCCGAGGcCGGg -3'
miRNA:   3'- uaGCGc---CUGUU-------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 57792 0.7 0.523679
Target:  5'- cGUCGCGcGGCGGGCGCGCgaAGGcCGu -3'
miRNA:   3'- -UAGCGC-CUGUUCGCGCGgcUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 57849 0.68 0.612838
Target:  5'- -gCGCGGGCGgcaaGGCcucgGCGCUcGGGUCGGg -3'
miRNA:   3'- uaGCGCCUGU----UCG----CGCGGcUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 58273 0.74 0.319166
Target:  5'- cUCGCcgcgcucacgGGGCcGGCGCGCCGGGGggcgCGGg -3'
miRNA:   3'- uAGCG----------CCUGuUCGCGCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 59101 0.66 0.75147
Target:  5'- cUCGCGcucGCAGGCGCGCgCGAGcUCc- -3'
miRNA:   3'- uAGCGCc--UGUUCGCGCG-GCUCcAGcu -5'
23775 3' -59.5 NC_005261.1 + 59658 0.67 0.683166
Target:  5'- --gGCGGGCGAcuGCG-GCCGGGucGUCGAa -3'
miRNA:   3'- uagCGCCUGUU--CGCgCGGCUC--CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 60839 0.66 0.712856
Target:  5'- cAUCgGCGGcgGCGAggucGCGCGCCG-GGcCGAg -3'
miRNA:   3'- -UAG-CGCC--UGUU----CGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 63023 0.67 0.693114
Target:  5'- -gCGCGGGCGccGGCGC-CCGcGG-CGAg -3'
miRNA:   3'- uaGCGCCUGU--UCGCGcGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 63368 0.74 0.31206
Target:  5'- -gCGCGGuGCGGGUGUGCCG-GGUCGc -3'
miRNA:   3'- uaGCGCC-UGUUCGCGCGGCuCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 65590 0.67 0.673176
Target:  5'- -cCGCGaGCuccuGCuCGCCGGGGUCGGc -3'
miRNA:   3'- uaGCGCcUGuu--CGcGCGGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 67055 0.66 0.75147
Target:  5'- -cCGUGuaGGCGGGCGCGCgCGGGGgcucgcUCGGg -3'
miRNA:   3'- uaGCGC--CUGUUCGCGCG-GCUCC------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 68138 0.67 0.683166
Target:  5'- -gCGCGG-CGAcCGCGCCGuGGcCGGc -3'
miRNA:   3'- uaGCGCCuGUUcGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 68561 0.7 0.476267
Target:  5'- -gCGCGGGCucuuuGAGCGCgucgccGCCGAGG-CGGg -3'
miRNA:   3'- uaGCGCCUG-----UUCGCG------CGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 68701 0.66 0.760891
Target:  5'- -gCGCGGACGacGGCgGCGCCGGcccucacgcGG-CGGg -3'
miRNA:   3'- uaGCGCCUGU--UCG-CGCGGCU---------CCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.