Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 69193 | 0.68 | 0.616862 |
Target: 5'- cGUCGCGGACGcggccaacgacGuccuccgggagcuguGCGCGCUGGGG-CGGu -3' miRNA: 3'- -UAGCGCCUGU-----------U---------------CGCGCGGCUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 69450 | 0.74 | 0.317735 |
Target: 5'- -gCGCGGACGagcugcGGCGCGUCGAGGgccacauccgcgCGAu -3' miRNA: 3'- uaGCGCCUGU------UCGCGCGGCUCCa-----------GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 69533 | 0.71 | 0.422352 |
Target: 5'- -gCGCGGGCGcuggcgcGCGCGCUGGGGaCGGc -3' miRNA: 3'- uaGCGCCUGUu------CGCGCGGCUCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 70339 | 0.67 | 0.703014 |
Target: 5'- -aCGCGu-CGAGCGgGCCGGGGacCGGg -3' miRNA: 3'- uaGCGCcuGUUCGCgCGGCUCCa-GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 72458 | 0.7 | 0.476267 |
Target: 5'- -cCGCGG-CGAGCGCGgCGAGcG-CGAg -3' miRNA: 3'- uaGCGCCuGUUCGCGCgGCUC-CaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 72688 | 0.66 | 0.760891 |
Target: 5'- -gCGCGaACcGGCGCGCC-AGGUCc- -3' miRNA: 3'- uaGCGCcUGuUCGCGCGGcUCCAGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 72873 | 0.7 | 0.503525 |
Target: 5'- -cCGCGGGCAGGUccgccccGcCGCCGGGGUaGAg -3' miRNA: 3'- uaGCGCCUGUUCG-------C-GCGGCUCCAgCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 73720 | 0.66 | 0.75147 |
Target: 5'- -cCGCGGuCGGcgugcgcgcuuGCGCGCgGGGGUCc- -3' miRNA: 3'- uaGCGCCuGUU-----------CGCGCGgCUCCAGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74029 | 0.71 | 0.457902 |
Target: 5'- -aCGCccagcaagauGGACcAGCGCGCCGGGGggcugCGGc -3' miRNA: 3'- uaGCG----------CCUGuUCGCGCGGCUCCa----GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74417 | 0.69 | 0.582756 |
Target: 5'- -cCGCGGGCGGGaGgGCCGAGGa--- -3' miRNA: 3'- uaGCGCCUGUUCgCgCGGCUCCagcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74740 | 0.8 | 0.138494 |
Target: 5'- -cCGCGGACAaccugcuggcgcggcAGCGCGCCacaggcgcgGAGGUCGAc -3' miRNA: 3'- uaGCGCCUGU---------------UCGCGCGG---------CUCCAGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74838 | 0.72 | 0.396805 |
Target: 5'- cUCGCGGACcuggggaggcGGCGCGCCG-GG-CGGa -3' miRNA: 3'- uAGCGCCUGu---------UCGCGCGGCuCCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 74949 | 0.74 | 0.305075 |
Target: 5'- -gCGCGGGCGcgcucGGCGCGCuCGAGGcCGc -3' miRNA: 3'- uaGCGCCUGU-----UCGCGCG-GCUCCaGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 75192 | 0.66 | 0.732331 |
Target: 5'- uGUCGCGGACcuucauGGCG-GCCGcGGUggCGGc -3' miRNA: 3'- -UAGCGCCUGu-----UCGCgCGGCuCCA--GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 75502 | 0.66 | 0.741947 |
Target: 5'- -gCGCgGGGCGcuggaGGCGCacGCCGuGGUCGc -3' miRNA: 3'- uaGCG-CCUGU-----UCGCG--CGGCuCCAGCu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 79173 | 0.67 | 0.683166 |
Target: 5'- -cCGUGG-CcAGCGCGCCGaAGGgguucgCGAc -3' miRNA: 3'- uaGCGCCuGuUCGCGCGGC-UCCa-----GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 80087 | 0.69 | 0.533385 |
Target: 5'- -aCGCGGACcggcgcGCGCGCCGcGGUacCGGc -3' miRNA: 3'- uaGCGCCUGuu----CGCGCGGCuCCA--GCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 80667 | 0.66 | 0.760891 |
Target: 5'- cUCGCGGu---GCGCGCCGucG-CGGa -3' miRNA: 3'- uAGCGCCuguuCGCGCGGCucCaGCU- -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 80884 | 0.66 | 0.722631 |
Target: 5'- -gCGCGGGCuucAGCgGCGCCucccaGGGGUCc- -3' miRNA: 3'- uaGCGCCUGu--UCG-CGCGG-----CUCCAGcu -5' |
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23775 | 3' | -59.5 | NC_005261.1 | + | 82055 | 0.68 | 0.602787 |
Target: 5'- -gCGCGGGCca-CGuCGCCG-GGUCGAc -3' miRNA: 3'- uaGCGCCUGuucGC-GCGGCuCCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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