miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 82286 0.74 0.29753
Target:  5'- gGUCGCGGAUGcAGCGC-CCGAGGcuguccaUCGAg -3'
miRNA:   3'- -UAGCGCCUGU-UCGCGcGGCUCC-------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 82663 0.69 0.572788
Target:  5'- -gCGCGGAUGAGCGCcucgaGCCGcucGUCGGg -3'
miRNA:   3'- uaGCGCCUGUUCGCG-----CGGCuc-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 83383 0.73 0.333
Target:  5'- -gCGCGG-CGAGCGCggccucgGCCGAGG-CGAg -3'
miRNA:   3'- uaGCGCCuGUUCGCG-------CGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 83665 0.68 0.647071
Target:  5'- --gGCGGACGcgcgccugggcgcgcAGCGCGCCgccGAGG-CGGc -3'
miRNA:   3'- uagCGCCUGU---------------UCGCGCGG---CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 87415 0.66 0.732331
Target:  5'- -cCGUcGACGGGCGCGCCGgcgaAGGcgcCGAa -3'
miRNA:   3'- uaGCGcCUGUUCGCGCGGC----UCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 88210 0.66 0.75147
Target:  5'- -cCGCGccGGCAAGCGCgcgGCCGA-GUCGu -3'
miRNA:   3'- uaGCGC--CUGUUCGCG---CGGCUcCAGCu -5'
23775 3' -59.5 NC_005261.1 + 88474 0.67 0.693114
Target:  5'- --gGCGGGCcgugccgcgccgGAGCGCGCCGcGcUCGAc -3'
miRNA:   3'- uagCGCCUG------------UUCGCGCGGCuCcAGCU- -5'
23775 3' -59.5 NC_005261.1 + 89177 0.76 0.221821
Target:  5'- -cCGCGGACAAccuggagccgcucgcGgGCGCCGAGGcCGAc -3'
miRNA:   3'- uaGCGCCUGUU---------------CgCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 90233 0.76 0.236089
Target:  5'- --gGCGGGCGGGCGCGCCGucGGGUa-- -3'
miRNA:   3'- uagCGCCUGUUCGCGCGGC--UCCAgcu -5'
23775 3' -59.5 NC_005261.1 + 92606 0.67 0.693114
Target:  5'- cUCGCGGc---GCGUGCCGGGGcccCGGg -3'
miRNA:   3'- uAGCGCCuguuCGCGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 94547 0.67 0.693114
Target:  5'- uUCGCcuuCAGGaGCGCCG-GGUCGAa -3'
miRNA:   3'- uAGCGccuGUUCgCGCGGCuCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 96996 0.68 0.622902
Target:  5'- -gCGCGGcUAAGCGCGCCauuGGG-CGGg -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGc--UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 97177 0.69 0.533385
Target:  5'- gGUCGCGGGCGccGGcCGgGCCGcGGcCGGa -3'
miRNA:   3'- -UAGCGCCUGU--UC-GCgCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 97407 0.68 0.602787
Target:  5'- -cCGCGGGCuuggcGGGCGCGCCG-GGcCu- -3'
miRNA:   3'- uaGCGCCUG-----UUCGCGCGGCuCCaGcu -5'
23775 3' -59.5 NC_005261.1 + 98307 0.67 0.703014
Target:  5'- cUCGgGGGCGGGCGCcGCCGccagcGG-CGGc -3'
miRNA:   3'- uAGCgCCUGUUCGCG-CGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 98671 0.66 0.760891
Target:  5'- -gCGaGGGCGGGCucCGCCGGGGcCGGa -3'
miRNA:   3'- uaGCgCCUGUUCGc-GCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 99226 0.72 0.388513
Target:  5'- -cCGCGG-CAGGCGCGUCGGcGUCGc -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGCUcCAGCu -5'
23775 3' -59.5 NC_005261.1 + 99796 0.73 0.341208
Target:  5'- aGUCGCGGcGCGgauggcgaacAGCGCGCCGuccgccGGGUCGu -3'
miRNA:   3'- -UAGCGCC-UGU----------UCGCGCGGC------UCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 100041 0.66 0.722631
Target:  5'- -cCGCGGGCGucagcucgAGCGCGCCGccGcCGc -3'
miRNA:   3'- uaGCGCCUGU--------UCGCGCGGCucCaGCu -5'
23775 3' -59.5 NC_005261.1 + 101293 0.69 0.582756
Target:  5'- -cCGCGGucguCGAuGCGCGCCGuuagcGGGUgCGAg -3'
miRNA:   3'- uaGCGCCu---GUU-CGCGCGGC-----UCCA-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.