miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 108903 0.69 0.582756
Target:  5'- -cCGCcGGCGAGCgGgGCgCGGGGUCGGg -3'
miRNA:   3'- uaGCGcCUGUUCG-CgCG-GCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 107351 0.68 0.622902
Target:  5'- cGUUGCGGACcuGCgucgucguggGCGCCGGGG-CGc -3'
miRNA:   3'- -UAGCGCCUGuuCG----------CGCGGCUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 107264 0.66 0.760891
Target:  5'- -gCGCGGGCAcgggcgGGCGCGCaucAGG-CGGc -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGgc-UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 105490 0.66 0.741947
Target:  5'- -gCGCGGGCcccGAGCcCGCCGAGa-CGAa -3'
miRNA:   3'- uaGCGCCUG---UUCGcGCGGCUCcaGCU- -5'
23775 3' -59.5 NC_005261.1 + 105123 0.66 0.732331
Target:  5'- -gCGCGGGCGcgggccgccGGCGCGCgcAGGUCc- -3'
miRNA:   3'- uaGCGCCUGU---------UCGCGCGgcUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 104171 0.68 0.632974
Target:  5'- -cCGCGGGCGccGCGCGC--GGGUCGu -3'
miRNA:   3'- uaGCGCCUGUu-CGCGCGgcUCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 103428 0.66 0.760891
Target:  5'- -cCGCGGccacgcGCGcGCGCGCCucgcGGUCGGc -3'
miRNA:   3'- uaGCGCC------UGUuCGCGCGGcu--CCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 102763 0.76 0.236089
Target:  5'- -cCGCGGACGcgAGCGCGCCcGAGGccUCGc -3'
miRNA:   3'- uaGCGCCUGU--UCGCGCGG-CUCC--AGCu -5'
23775 3' -59.5 NC_005261.1 + 101293 0.69 0.582756
Target:  5'- -cCGCGGucguCGAuGCGCGCCGuuagcGGGUgCGAg -3'
miRNA:   3'- uaGCGCCu---GUU-CGCGCGGC-----UCCA-GCU- -5'
23775 3' -59.5 NC_005261.1 + 100041 0.66 0.722631
Target:  5'- -cCGCGGGCGucagcucgAGCGCGCCGccGcCGc -3'
miRNA:   3'- uaGCGCCUGU--------UCGCGCGGCucCaGCu -5'
23775 3' -59.5 NC_005261.1 + 99796 0.73 0.341208
Target:  5'- aGUCGCGGcGCGgauggcgaacAGCGCGCCGuccgccGGGUCGu -3'
miRNA:   3'- -UAGCGCC-UGU----------UCGCGCGGC------UCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 99226 0.72 0.388513
Target:  5'- -cCGCGG-CAGGCGCGUCGGcGUCGc -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGCUcCAGCu -5'
23775 3' -59.5 NC_005261.1 + 98671 0.66 0.760891
Target:  5'- -gCGaGGGCGGGCucCGCCGGGGcCGGa -3'
miRNA:   3'- uaGCgCCUGUUCGc-GCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 98307 0.67 0.703014
Target:  5'- cUCGgGGGCGGGCGCcGCCGccagcGG-CGGc -3'
miRNA:   3'- uAGCgCCUGUUCGCG-CGGCu----CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 97407 0.68 0.602787
Target:  5'- -cCGCGGGCuuggcGGGCGCGCCG-GGcCu- -3'
miRNA:   3'- uaGCGCCUG-----UUCGCGCGGCuCCaGcu -5'
23775 3' -59.5 NC_005261.1 + 97177 0.69 0.533385
Target:  5'- gGUCGCGGGCGccGGcCGgGCCGcGGcCGGa -3'
miRNA:   3'- -UAGCGCCUGU--UC-GCgCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 96996 0.68 0.622902
Target:  5'- -gCGCGGcUAAGCGCGCCauuGGG-CGGg -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGc--UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 94547 0.67 0.693114
Target:  5'- uUCGCcuuCAGGaGCGCCG-GGUCGAa -3'
miRNA:   3'- uAGCGccuGUUCgCGCGGCuCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 92606 0.67 0.693114
Target:  5'- cUCGCGGc---GCGUGCCGGGGcccCGGg -3'
miRNA:   3'- uAGCGCCuguuCGCGCGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 90233 0.76 0.236089
Target:  5'- --gGCGGGCGGGCGCGCCGucGGGUa-- -3'
miRNA:   3'- uagCGCCUGUUCGCGCGGC--UCCAgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.