miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 89177 0.76 0.221821
Target:  5'- -cCGCGGACAAccuggagccgcucgcGgGCGCCGAGGcCGAc -3'
miRNA:   3'- uaGCGCCUGUU---------------CgCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 88474 0.67 0.693114
Target:  5'- --gGCGGGCcgugccgcgccgGAGCGCGCCGcGcUCGAc -3'
miRNA:   3'- uagCGCCUG------------UUCGCGCGGCuCcAGCU- -5'
23775 3' -59.5 NC_005261.1 + 88210 0.66 0.75147
Target:  5'- -cCGCGccGGCAAGCGCgcgGCCGA-GUCGu -3'
miRNA:   3'- uaGCGC--CUGUUCGCG---CGGCUcCAGCu -5'
23775 3' -59.5 NC_005261.1 + 87415 0.66 0.732331
Target:  5'- -cCGUcGACGGGCGCGCCGgcgaAGGcgcCGAa -3'
miRNA:   3'- uaGCGcCUGUUCGCGCGGC----UCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 83665 0.68 0.647071
Target:  5'- --gGCGGACGcgcgccugggcgcgcAGCGCGCCgccGAGG-CGGc -3'
miRNA:   3'- uagCGCCUGU---------------UCGCGCGG---CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 83383 0.73 0.333
Target:  5'- -gCGCGG-CGAGCGCggccucgGCCGAGG-CGAg -3'
miRNA:   3'- uaGCGCCuGUUCGCG-------CGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 82663 0.69 0.572788
Target:  5'- -gCGCGGAUGAGCGCcucgaGCCGcucGUCGGg -3'
miRNA:   3'- uaGCGCCUGUUCGCG-----CGGCuc-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 82286 0.74 0.29753
Target:  5'- gGUCGCGGAUGcAGCGC-CCGAGGcuguccaUCGAg -3'
miRNA:   3'- -UAGCGCCUGU-UCGCGcGGCUCC-------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 82055 0.68 0.602787
Target:  5'- -gCGCGGGCca-CGuCGCCG-GGUCGAc -3'
miRNA:   3'- uaGCGCCUGuucGC-GCGGCuCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 80884 0.66 0.722631
Target:  5'- -gCGCGGGCuucAGCgGCGCCucccaGGGGUCc- -3'
miRNA:   3'- uaGCGCCUGu--UCG-CGCGG-----CUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 80667 0.66 0.760891
Target:  5'- cUCGCGGu---GCGCGCCGucG-CGGa -3'
miRNA:   3'- uAGCGCCuguuCGCGCGGCucCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 80087 0.69 0.533385
Target:  5'- -aCGCGGACcggcgcGCGCGCCGcGGUacCGGc -3'
miRNA:   3'- uaGCGCCUGuu----CGCGCGGCuCCA--GCU- -5'
23775 3' -59.5 NC_005261.1 + 79173 0.67 0.683166
Target:  5'- -cCGUGG-CcAGCGCGCCGaAGGgguucgCGAc -3'
miRNA:   3'- uaGCGCCuGuUCGCGCGGC-UCCa-----GCU- -5'
23775 3' -59.5 NC_005261.1 + 75502 0.66 0.741947
Target:  5'- -gCGCgGGGCGcuggaGGCGCacGCCGuGGUCGc -3'
miRNA:   3'- uaGCG-CCUGU-----UCGCG--CGGCuCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 75192 0.66 0.732331
Target:  5'- uGUCGCGGACcuucauGGCG-GCCGcGGUggCGGc -3'
miRNA:   3'- -UAGCGCCUGu-----UCGCgCGGCuCCA--GCU- -5'
23775 3' -59.5 NC_005261.1 + 74949 0.74 0.305075
Target:  5'- -gCGCGGGCGcgcucGGCGCGCuCGAGGcCGc -3'
miRNA:   3'- uaGCGCCUGU-----UCGCGCG-GCUCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 74838 0.72 0.396805
Target:  5'- cUCGCGGACcuggggaggcGGCGCGCCG-GG-CGGa -3'
miRNA:   3'- uAGCGCCUGu---------UCGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 74740 0.8 0.138494
Target:  5'- -cCGCGGACAaccugcuggcgcggcAGCGCGCCacaggcgcgGAGGUCGAc -3'
miRNA:   3'- uaGCGCCUGU---------------UCGCGCGG---------CUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 74417 0.69 0.582756
Target:  5'- -cCGCGGGCGGGaGgGCCGAGGa--- -3'
miRNA:   3'- uaGCGCCUGUUCgCgCGGCUCCagcu -5'
23775 3' -59.5 NC_005261.1 + 74029 0.71 0.457902
Target:  5'- -aCGCccagcaagauGGACcAGCGCGCCGGGGggcugCGGc -3'
miRNA:   3'- uaGCG----------CCUGuUCGCGCGGCUCCa----GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.