miRNA display CGI


Results 61 - 80 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 73720 0.66 0.75147
Target:  5'- -cCGCGGuCGGcgugcgcgcuuGCGCGCgGGGGUCc- -3'
miRNA:   3'- uaGCGCCuGUU-----------CGCGCGgCUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 72873 0.7 0.503525
Target:  5'- -cCGCGGGCAGGUccgccccGcCGCCGGGGUaGAg -3'
miRNA:   3'- uaGCGCCUGUUCG-------C-GCGGCUCCAgCU- -5'
23775 3' -59.5 NC_005261.1 + 72688 0.66 0.760891
Target:  5'- -gCGCGaACcGGCGCGCC-AGGUCc- -3'
miRNA:   3'- uaGCGCcUGuUCGCGCGGcUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 72458 0.7 0.476267
Target:  5'- -cCGCGG-CGAGCGCGgCGAGcG-CGAg -3'
miRNA:   3'- uaGCGCCuGUUCGCGCgGCUC-CaGCU- -5'
23775 3' -59.5 NC_005261.1 + 70339 0.67 0.703014
Target:  5'- -aCGCGu-CGAGCGgGCCGGGGacCGGg -3'
miRNA:   3'- uaGCGCcuGUUCGCgCGGCUCCa-GCU- -5'
23775 3' -59.5 NC_005261.1 + 69533 0.71 0.422352
Target:  5'- -gCGCGGGCGcuggcgcGCGCGCUGGGGaCGGc -3'
miRNA:   3'- uaGCGCCUGUu------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 69450 0.74 0.317735
Target:  5'- -gCGCGGACGagcugcGGCGCGUCGAGGgccacauccgcgCGAu -3'
miRNA:   3'- uaGCGCCUGU------UCGCGCGGCUCCa-----------GCU- -5'
23775 3' -59.5 NC_005261.1 + 69193 0.68 0.616862
Target:  5'- cGUCGCGGACGcggccaacgacGuccuccgggagcuguGCGCGCUGGGG-CGGu -3'
miRNA:   3'- -UAGCGCCUGU-----------U---------------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 68701 0.66 0.760891
Target:  5'- -gCGCGGACGacGGCgGCGCCGGcccucacgcGG-CGGg -3'
miRNA:   3'- uaGCGCCUGU--UCG-CGCGGCU---------CCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 68561 0.7 0.476267
Target:  5'- -gCGCGGGCucuuuGAGCGCgucgccGCCGAGG-CGGg -3'
miRNA:   3'- uaGCGCCUG-----UUCGCG------CGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 68138 0.67 0.683166
Target:  5'- -gCGCGG-CGAcCGCGCCGuGGcCGGc -3'
miRNA:   3'- uaGCGCCuGUUcGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 67055 0.66 0.75147
Target:  5'- -cCGUGuaGGCGGGCGCGCgCGGGGgcucgcUCGGg -3'
miRNA:   3'- uaGCGC--CUGUUCGCGCG-GCUCC------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 65590 0.67 0.673176
Target:  5'- -cCGCGaGCuccuGCuCGCCGGGGUCGGc -3'
miRNA:   3'- uaGCGCcUGuu--CGcGCGGCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 63368 0.74 0.31206
Target:  5'- -gCGCGGuGCGGGUGUGCCG-GGUCGc -3'
miRNA:   3'- uaGCGCC-UGUUCGCGCGGCuCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 63023 0.67 0.693114
Target:  5'- -gCGCGGGCGccGGCGC-CCGcGG-CGAg -3'
miRNA:   3'- uaGCGCCUGU--UCGCGcGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 60839 0.66 0.712856
Target:  5'- cAUCgGCGGcgGCGAggucGCGCGCCG-GGcCGAg -3'
miRNA:   3'- -UAG-CGCC--UGUU----CGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 59658 0.67 0.683166
Target:  5'- --gGCGGGCGAcuGCG-GCCGGGucGUCGAa -3'
miRNA:   3'- uagCGCCUGUU--CGCgCGGCUC--CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 59101 0.66 0.75147
Target:  5'- cUCGCGcucGCAGGCGCGCgCGAGcUCc- -3'
miRNA:   3'- uAGCGCc--UGUUCGCGCG-GCUCcAGcu -5'
23775 3' -59.5 NC_005261.1 + 58273 0.74 0.319166
Target:  5'- cUCGCcgcgcucacgGGGCcGGCGCGCCGGGGggcgCGGg -3'
miRNA:   3'- uAGCG----------CCUGuUCGCGCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 57849 0.68 0.612838
Target:  5'- -gCGCGGGCGgcaaGGCcucgGCGCUcGGGUCGGg -3'
miRNA:   3'- uaGCGCCUGU----UCG----CGCGGcUCCAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.