miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 23162 0.75 0.265683
Target:  5'- --aGUGGgcccgGCAGGCGCGCCGGGGgCGAc -3'
miRNA:   3'- uagCGCC-----UGUUCGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 102763 0.76 0.236089
Target:  5'- -cCGCGGACGcgAGCGCGCCcGAGGccUCGc -3'
miRNA:   3'- uaGCGCCUGU--UCGCGCGG-CUCC--AGCu -5'
23775 3' -59.5 NC_005261.1 + 90233 0.76 0.236089
Target:  5'- --gGCGGGCGGGCGCGCCGucGGGUa-- -3'
miRNA:   3'- uagCGCCUGUUCGCGCGGC--UCCAgcu -5'
23775 3' -59.5 NC_005261.1 + 46232 0.76 0.225047
Target:  5'- -gCGUGGACGAGCGCGUCGcAGGcCGc -3'
miRNA:   3'- uaGCGCCUGUUCGCGCGGC-UCCaGCu -5'
23775 3' -59.5 NC_005261.1 + 89177 0.76 0.221821
Target:  5'- -cCGCGGACAAccuggagccgcucgcGgGCGCCGAGGcCGAc -3'
miRNA:   3'- uaGCGCCUGUU---------------CgCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 58273 0.74 0.319166
Target:  5'- cUCGCcgcgcucacgGGGCcGGCGCGCCGGGGggcgCGGg -3'
miRNA:   3'- uAGCG----------CCUGuUCGCGCGGCUCCa---GCU- -5'
23775 3' -59.5 NC_005261.1 + 21699 0.73 0.326393
Target:  5'- cGUCGCGGGCGAGCGCuucaCgGAGGacugcuUCGAg -3'
miRNA:   3'- -UAGCGCCUGUUCGCGc---GgCUCC------AGCU- -5'
23775 3' -59.5 NC_005261.1 + 74029 0.71 0.457902
Target:  5'- -aCGCccagcaagauGGACcAGCGCGCCGGGGggcugCGGc -3'
miRNA:   3'- uaGCG----------CCUGuUCGCGCGGCUCCa----GCU- -5'
23775 3' -59.5 NC_005261.1 + 18970 0.71 0.457902
Target:  5'- aGUgGCGGugGGGCGCGCaCGAaagucaaaGGUCa- -3'
miRNA:   3'- -UAgCGCCugUUCGCGCG-GCU--------CCAGcu -5'
23775 3' -59.5 NC_005261.1 + 111841 0.71 0.452467
Target:  5'- gGUCGCGGAgCGcguGCGCGCCaaccgcgccuucgugGAGGUCu- -3'
miRNA:   3'- -UAGCGCCU-GUu--CGCGCGG---------------CUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 113900 0.71 0.431085
Target:  5'- -aCGCGG-CGGGCGCgaugGCCGAGGcagCGGg -3'
miRNA:   3'- uaGCGCCuGUUCGCG----CGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 131769 0.71 0.431085
Target:  5'- -gCGCGG-CGGGCGCGCCGcuGGGcccCGAc -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGC--UCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 69533 0.71 0.422352
Target:  5'- -gCGCGGGCGcuggcgcGCGCGCUGGGGaCGGc -3'
miRNA:   3'- uaGCGCCUGUu------CGCGCGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 74838 0.72 0.396805
Target:  5'- cUCGCGGACcuggggaggcGGCGCGCCG-GG-CGGa -3'
miRNA:   3'- uAGCGCCUGu---------UCGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 99226 0.72 0.388513
Target:  5'- -cCGCGG-CAGGCGCGUCGGcGUCGc -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGGCUcCAGCu -5'
23775 3' -59.5 NC_005261.1 + 54330 0.72 0.388513
Target:  5'- -gCGUGGcCGAGCGCGUacAGGUCGAu -3'
miRNA:   3'- uaGCGCCuGUUCGCGCGgcUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 109883 0.72 0.372274
Target:  5'- -cCGCGGGCGGGCGCcCCGGGG-Cu- -3'
miRNA:   3'- uaGCGCCUGUUCGCGcGGCUCCaGcu -5'
23775 3' -59.5 NC_005261.1 + 111698 0.73 0.363542
Target:  5'- uGUCGUGGACcgcaugaAGGCGCaGUCGcGGGUCGAc -3'
miRNA:   3'- -UAGCGCCUG-------UUCGCG-CGGC-UCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 99796 0.73 0.341208
Target:  5'- aGUCGCGGcGCGgauggcgaacAGCGCGCCGuccgccGGGUCGu -3'
miRNA:   3'- -UAGCGCC-UGU----------UCGCGCGGC------UCCAGCu -5'
23775 3' -59.5 NC_005261.1 + 83383 0.73 0.333
Target:  5'- -gCGCGG-CGAGCGCggccucgGCCGAGG-CGAg -3'
miRNA:   3'- uaGCGCCuGUUCGCG-------CGGCUCCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.