miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 3' -59.5 NC_005261.1 + 80087 0.69 0.533385
Target:  5'- -aCGCGGACcggcgcGCGCGCCGcGGUacCGGc -3'
miRNA:   3'- uaGCGCCUGuu----CGCGCGGCuCCA--GCU- -5'
23775 3' -59.5 NC_005261.1 + 128100 0.69 0.533385
Target:  5'- ---aCGGGCGAGCgGCGCggcgCGGGGUCGGg -3'
miRNA:   3'- uagcGCCUGUUCG-CGCG----GCUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 97177 0.69 0.533385
Target:  5'- gGUCGCGGGCGccGGcCGgGCCGcGGcCGGa -3'
miRNA:   3'- -UAGCGCCUGU--UC-GCgCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 56116 0.69 0.543154
Target:  5'- --aGCGGcGgGAGCGCGCCGcAGGgCGGg -3'
miRNA:   3'- uagCGCC-UgUUCGCGCGGC-UCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 2422 0.69 0.550028
Target:  5'- -gCGCGGcgGCGGGCcgcgaucucggccaGCGCCucGGGGUCGAa -3'
miRNA:   3'- uaGCGCC--UGUUCG--------------CGCGG--CUCCAGCU- -5'
23775 3' -59.5 NC_005261.1 + 3453 0.69 0.552982
Target:  5'- -gCGCGGGCcgcCGCGCCGcGcGUCGAg -3'
miRNA:   3'- uaGCGCCUGuucGCGCGGCuC-CAGCU- -5'
23775 3' -59.5 NC_005261.1 + 30983 0.69 0.552982
Target:  5'- -cCGCGGcGCAAGCGCaagucgGCCGGGGcCa- -3'
miRNA:   3'- uaGCGCC-UGUUCGCG------CGGCUCCaGcu -5'
23775 3' -59.5 NC_005261.1 + 13493 0.7 0.504478
Target:  5'- -aUGCGGACGAGCGCGCa---GUCGc -3'
miRNA:   3'- uaGCGCCUGUUCGCGCGgcucCAGCu -5'
23775 3' -59.5 NC_005261.1 + 132516 0.7 0.504478
Target:  5'- -aCGCGGGCugggacgaguacGAGCGCGCCcucgcgcgcGAGGgCGAg -3'
miRNA:   3'- uaGCGCCUG------------UUCGCGCGG---------CUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 119278 0.7 0.504478
Target:  5'- cUCGCuGGGCGGGgGCucGCCGAGGaagCGGa -3'
miRNA:   3'- uAGCG-CCUGUUCgCG--CGGCUCCa--GCU- -5'
23775 3' -59.5 NC_005261.1 + 111841 0.71 0.452467
Target:  5'- gGUCGCGGAgCGcguGCGCGCCaaccgcgccuucgugGAGGUCu- -3'
miRNA:   3'- -UAGCGCCU-GUu--CGCGCGG---------------CUCCAGcu -5'
23775 3' -59.5 NC_005261.1 + 18970 0.71 0.457902
Target:  5'- aGUgGCGGugGGGCGCGCaCGAaagucaaaGGUCa- -3'
miRNA:   3'- -UAgCGCCugUUCGCGCG-GCU--------CCAGcu -5'
23775 3' -59.5 NC_005261.1 + 74029 0.71 0.457902
Target:  5'- -aCGCccagcaagauGGACcAGCGCGCCGGGGggcugCGGc -3'
miRNA:   3'- uaGCG----------CCUGuUCGCGCGGCUCCa----GCU- -5'
23775 3' -59.5 NC_005261.1 + 133833 0.71 0.467038
Target:  5'- -gCGCGGccGCGuGCGCGCCGuGGcCGGc -3'
miRNA:   3'- uaGCGCC--UGUuCGCGCGGCuCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 68561 0.7 0.476267
Target:  5'- -gCGCGGGCucuuuGAGCGCgucgccGCCGAGG-CGGg -3'
miRNA:   3'- uaGCGCCUG-----UUCGCG------CGGCUCCaGCU- -5'
23775 3' -59.5 NC_005261.1 + 72458 0.7 0.476267
Target:  5'- -cCGCGG-CGAGCGCGgCGAGcG-CGAg -3'
miRNA:   3'- uaGCGCCuGUUCGCGCgGCUC-CaGCU- -5'
23775 3' -59.5 NC_005261.1 + 126940 0.7 0.494991
Target:  5'- -gCGCGGcCAGGgGCGCCGGGcG-CGGg -3'
miRNA:   3'- uaGCGCCuGUUCgCGCGGCUC-CaGCU- -5'
23775 3' -59.5 NC_005261.1 + 43774 0.7 0.494991
Target:  5'- cUCGUGGGgcGGCGCGCgGAGGgcgccgCGGg -3'
miRNA:   3'- uAGCGCCUguUCGCGCGgCUCCa-----GCU- -5'
23775 3' -59.5 NC_005261.1 + 131460 0.7 0.498776
Target:  5'- cUCGCGGGCGccucccgccuccgcgAGCGCGCCG---UCGAc -3'
miRNA:   3'- uAGCGCCUGU---------------UCGCGCGGCuccAGCU- -5'
23775 3' -59.5 NC_005261.1 + 72873 0.7 0.503525
Target:  5'- -cCGCGGGCAGGUccgccccGcCGCCGGGGUaGAg -3'
miRNA:   3'- uaGCGCCUGUUCG-------C-GCGGCUCCAgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.