Results 61 - 80 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 109883 | 0.72 | 0.372274 |
Target: 5'- -cCGCGGGCGGGCGCcCCGGGG-Cu- -3' miRNA: 3'- uaGCGCCUGUUCGCGcGGCUCCaGcu -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 54330 | 0.72 | 0.388513 |
Target: 5'- -gCGUGGcCGAGCGCGUacAGGUCGAu -3' miRNA: 3'- uaGCGCCuGUUCGCGCGgcUCCAGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 72458 | 0.7 | 0.476267 |
Target: 5'- -cCGCGG-CGAGCGCGgCGAGcG-CGAg -3' miRNA: 3'- uaGCGCCuGUUCGCGCgGCUC-CaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 126940 | 0.7 | 0.494991 |
Target: 5'- -gCGCGGcCAGGgGCGCCGGGcG-CGGg -3' miRNA: 3'- uaGCGCCuGUUCgCGCGGCUC-CaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 43774 | 0.7 | 0.494991 |
Target: 5'- cUCGUGGGgcGGCGCGCgGAGGgcgccgCGGg -3' miRNA: 3'- uAGCGCCUguUCGCGCGgCUCCa-----GCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 131460 | 0.7 | 0.498776 |
Target: 5'- cUCGCGGGCGccucccgccuccgcgAGCGCGCCG---UCGAc -3' miRNA: 3'- uAGCGCCUGU---------------UCGCGCGGCuccAGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 72873 | 0.7 | 0.503525 |
Target: 5'- -cCGCGGGCAGGUccgccccGcCGCCGGGGUaGAg -3' miRNA: 3'- uaGCGCCUGUUCG-------C-GCGGCUCCAgCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 119278 | 0.7 | 0.504478 |
Target: 5'- cUCGCuGGGCGGGgGCucGCCGAGGaagCGGa -3' miRNA: 3'- uAGCG-CCUGUUCgCG--CGGCUCCa--GCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 132516 | 0.7 | 0.504478 |
Target: 5'- -aCGCGGGCugggacgaguacGAGCGCGCCcucgcgcgcGAGGgCGAg -3' miRNA: 3'- uaGCGCCUG------------UUCGCGCGG---------CUCCaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 13493 | 0.7 | 0.504478 |
Target: 5'- -aUGCGGACGAGCGCGCa---GUCGc -3' miRNA: 3'- uaGCGCCUGUUCGCGCGgcucCAGCu -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 68561 | 0.7 | 0.476267 |
Target: 5'- -gCGCGGGCucuuuGAGCGCgucgccGCCGAGG-CGGg -3' miRNA: 3'- uaGCGCCUG-----UUCGCG------CGGCUCCaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 133833 | 0.71 | 0.467038 |
Target: 5'- -gCGCGGccGCGuGCGCGCCGuGGcCGGc -3' miRNA: 3'- uaGCGCC--UGUuCGCGCGGCuCCaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 99226 | 0.72 | 0.388513 |
Target: 5'- -cCGCGG-CAGGCGCGUCGGcGUCGc -3' miRNA: 3'- uaGCGCCuGUUCGCGCGGCUcCAGCu -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 74838 | 0.72 | 0.396805 |
Target: 5'- cUCGCGGACcuggggaggcGGCGCGCCG-GG-CGGa -3' miRNA: 3'- uAGCGCCUGu---------UCGCGCGGCuCCaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 69533 | 0.71 | 0.422352 |
Target: 5'- -gCGCGGGCGcuggcgcGCGCGCUGGGGaCGGc -3' miRNA: 3'- uaGCGCCUGUu------CGCGCGGCUCCaGCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 131769 | 0.71 | 0.431085 |
Target: 5'- -gCGCGG-CGGGCGCGCCGcuGGGcccCGAc -3' miRNA: 3'- uaGCGCCuGUUCGCGCGGC--UCCa--GCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 113900 | 0.71 | 0.431085 |
Target: 5'- -aCGCGG-CGGGCGCgaugGCCGAGGcagCGGg -3' miRNA: 3'- uaGCGCCuGUUCGCG----CGGCUCCa--GCU- -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 111841 | 0.71 | 0.452467 |
Target: 5'- gGUCGCGGAgCGcguGCGCGCCaaccgcgccuucgugGAGGUCu- -3' miRNA: 3'- -UAGCGCCU-GUu--CGCGCGG---------------CUCCAGcu -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 18970 | 0.71 | 0.457902 |
Target: 5'- aGUgGCGGugGGGCGCGCaCGAaagucaaaGGUCa- -3' miRNA: 3'- -UAgCGCCugUUCGCGCG-GCU--------CCAGcu -5' |
|||||||
23775 | 3' | -59.5 | NC_005261.1 | + | 74029 | 0.71 | 0.457902 |
Target: 5'- -aCGCccagcaagauGGACcAGCGCGCCGGGGggcugCGGc -3' miRNA: 3'- uaGCG----------CCUGuUCGCGCGGCUCCa----GCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home