miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 5' -55.3 NC_005261.1 + 50516 0.66 0.916573
Target:  5'- aGCCAGCg-CAGCAggGCCguCGUCUUg- -3'
miRNA:   3'- gCGGUUGagGUCGUa-CGG--GCAGAAgu -5'
23775 5' -55.3 NC_005261.1 + 105082 0.66 0.916573
Target:  5'- cCGCCGACUCC-GCGc-CCCGgacCUUCc -3'
miRNA:   3'- -GCGGUUGAGGuCGUacGGGCa--GAAGu -5'
23775 5' -55.3 NC_005261.1 + 12351 0.66 0.910581
Target:  5'- cCGCCGccGCggCGGCAaccgGCgCGUCUUCGa -3'
miRNA:   3'- -GCGGU--UGagGUCGUa---CGgGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 58908 0.66 0.910581
Target:  5'- gCGCCAGCgcgcgcaCCAGCGcGCCCG-Cg--- -3'
miRNA:   3'- -GCGGUUGa------GGUCGUaCGGGCaGaagu -5'
23775 5' -55.3 NC_005261.1 + 124405 0.66 0.910581
Target:  5'- aGCCGguACUgCAGCGccaugGCCUG-CUUCAu -3'
miRNA:   3'- gCGGU--UGAgGUCGUa----CGGGCaGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 3343 0.66 0.904344
Target:  5'- gCGCCGcggcGC-CCGGCGcGCCgGcCUUCAg -3'
miRNA:   3'- -GCGGU----UGaGGUCGUaCGGgCaGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 102709 0.66 0.904344
Target:  5'- cCGCCGuCUCCGccGCGUccgcGCCCGccgccagggcguUCUUCAg -3'
miRNA:   3'- -GCGGUuGAGGU--CGUA----CGGGC------------AGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 62623 0.66 0.897864
Target:  5'- gGCCAucaGCgCCAGCGUGUCCGgcg-CGa -3'
miRNA:   3'- gCGGU---UGaGGUCGUACGGGCagaaGU- -5'
23775 5' -55.3 NC_005261.1 + 106439 0.66 0.891146
Target:  5'- aCGCCcGC-CCAGUcgGCCaCGUCcgCGc -3'
miRNA:   3'- -GCGGuUGaGGUCGuaCGG-GCAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 77858 0.66 0.891146
Target:  5'- aGCCGGCUCCA-CAcGCCC-UCUcCAg -3'
miRNA:   3'- gCGGUUGAGGUcGUaCGGGcAGAaGU- -5'
23775 5' -55.3 NC_005261.1 + 13068 0.66 0.891146
Target:  5'- uGCCGggcGCgUCC-GCcgGCCCGUCggCGg -3'
miRNA:   3'- gCGGU---UG-AGGuCGuaCGGGCAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 65263 0.66 0.884191
Target:  5'- uCGCCGGgUUCAGCcgGUGCCgGUCcacgcUCAg -3'
miRNA:   3'- -GCGGUUgAGGUCG--UACGGgCAGa----AGU- -5'
23775 5' -55.3 NC_005261.1 + 1669 0.66 0.884191
Target:  5'- gGCCAugUCCuuGC--GCCCGUCg--- -3'
miRNA:   3'- gCGGUugAGGu-CGuaCGGGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 66213 0.66 0.884191
Target:  5'- gCGCCAGCacgccgcCCAGCAgccgcugcuugaUGCCCGcCgucgUCAc -3'
miRNA:   3'- -GCGGUUGa------GGUCGU------------ACGGGCaGa---AGU- -5'
23775 5' -55.3 NC_005261.1 + 130589 0.67 0.869592
Target:  5'- cCGCgCGGCcCCGcGCcugGCCCGUCUUUg -3'
miRNA:   3'- -GCG-GUUGaGGU-CGua-CGGGCAGAAGu -5'
23775 5' -55.3 NC_005261.1 + 101753 0.67 0.869592
Target:  5'- uCGgCAGCUCCAgguGCAcGCCCGcCUcCAg -3'
miRNA:   3'- -GCgGUUGAGGU---CGUaCGGGCaGAaGU- -5'
23775 5' -55.3 NC_005261.1 + 64894 0.67 0.869592
Target:  5'- gCGCCGGgUCCAGCA-GCgCGUggUUCAg -3'
miRNA:   3'- -GCGGUUgAGGUCGUaCGgGCAg-AAGU- -5'
23775 5' -55.3 NC_005261.1 + 62988 0.67 0.869592
Target:  5'- gGCCcucCUCCAGCcgGCCC-UCggCGg -3'
miRNA:   3'- gCGGuu-GAGGUCGuaCGGGcAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 101003 0.67 0.861959
Target:  5'- cCGCCAGCcgcgcgUCCAGCGcGCCUGUg---- -3'
miRNA:   3'- -GCGGUUG------AGGUCGUaCGGGCAgaagu -5'
23775 5' -55.3 NC_005261.1 + 61002 0.67 0.861959
Target:  5'- gCGCCuccgGCUCCGGCAU-CgCCGUCg--- -3'
miRNA:   3'- -GCGGu---UGAGGUCGUAcG-GGCAGaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.