Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23775 | 5' | -55.3 | NC_005261.1 | + | 61002 | 0.67 | 0.861959 |
Target: 5'- gCGCCuccgGCUCCGGCAU-CgCCGUCg--- -3' miRNA: 3'- -GCGGu---UGAGGUCGUAcG-GGCAGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 101003 | 0.67 | 0.861959 |
Target: 5'- cCGCCAGCcgcgcgUCCAGCGcGCCUGUg---- -3' miRNA: 3'- -GCGGUUG------AGGUCGUaCGGGCAgaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 101753 | 0.67 | 0.869592 |
Target: 5'- uCGgCAGCUCCAgguGCAcGCCCGcCUcCAg -3' miRNA: 3'- -GCgGUUGAGGU---CGUaCGGGCaGAaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 62988 | 0.67 | 0.869592 |
Target: 5'- gGCCcucCUCCAGCcgGCCC-UCggCGg -3' miRNA: 3'- gCGGuu-GAGGUCGuaCGGGcAGaaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 64894 | 0.67 | 0.869592 |
Target: 5'- gCGCCGGgUCCAGCA-GCgCGUggUUCAg -3' miRNA: 3'- -GCGGUUgAGGUCGUaCGgGCAg-AAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 130589 | 0.67 | 0.869592 |
Target: 5'- cCGCgCGGCcCCGcGCcugGCCCGUCUUUg -3' miRNA: 3'- -GCG-GUUGaGGU-CGua-CGGGCAGAAGu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 53722 | 0.68 | 0.820706 |
Target: 5'- gGCCAGCUgCGGCGcGCCCG-Ca--- -3' miRNA: 3'- gCGGUUGAgGUCGUaCGGGCaGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 108211 | 0.68 | 0.793762 |
Target: 5'- gCGCCAgcacggcgcGCUCCAGCAuggcgcacgUGCCCGg----- -3' miRNA: 3'- -GCGGU---------UGAGGUCGU---------ACGGGCagaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 78879 | 0.68 | 0.811 |
Target: 5'- gCGUCAGCcgguucgCCAGCAgcgGCCCGcccuuguugcucuUCUUCGc -3' miRNA: 3'- -GCGGUUGa------GGUCGUa--CGGGC-------------AGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 103108 | 0.68 | 0.811891 |
Target: 5'- gGCCAGCgcccccggcgCCAGCGcGCCCGggUUCu -3' miRNA: 3'- gCGGUUGa---------GGUCGUaCGGGCagAAGu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 118249 | 0.68 | 0.829344 |
Target: 5'- aCGCCGuCUgCGGCGUGCCgGUgcacugcgcgcaCUUCGu -3' miRNA: 3'- -GCGGUuGAgGUCGUACGGgCA------------GAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 12111 | 0.68 | 0.829344 |
Target: 5'- gCGCCAGCUCUAGCGccaggauggcGCCCGcCg--- -3' miRNA: 3'- -GCGGUUGAGGUCGUa---------CGGGCaGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 4164 | 0.68 | 0.829344 |
Target: 5'- gCGCCAGCUgCAGguccggGCCCGcgagCUUCGc -3' miRNA: 3'- -GCGGUUGAgGUCgua---CGGGCa---GAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 74622 | 0.68 | 0.828489 |
Target: 5'- gCGCCGGCcuUCCcgcugcgcuucugGGaCGaGCCCGUCUUCGc -3' miRNA: 3'- -GCGGUUG--AGG-------------UC-GUaCGGGCAGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 2137 | 0.68 | 0.820706 |
Target: 5'- gCGCUcACgUCCGGCGcGCCCGUCc--- -3' miRNA: 3'- -GCGGuUG-AGGUCGUaCGGGCAGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 84776 | 0.68 | 0.820706 |
Target: 5'- gGCC-GCUCCAGU-UGCCCGcCUg-- -3' miRNA: 3'- gCGGuUGAGGUCGuACGGGCaGAagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 75075 | 0.68 | 0.820706 |
Target: 5'- gCGCCGGCgggggCuCGGCggGCaUCGUCUUCGg -3' miRNA: 3'- -GCGGUUGa----G-GUCGuaCG-GGCAGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 82729 | 0.68 | 0.820706 |
Target: 5'- aCGCCG--UCCAGCcgcgccaGCCCGUCUgCGa -3' miRNA: 3'- -GCGGUugAGGUCGua-----CGGGCAGAaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 126076 | 0.69 | 0.775029 |
Target: 5'- cCGCCGGCcUCGGCGggcgcGCCCaUCUUCGc -3' miRNA: 3'- -GCGGUUGaGGUCGUa----CGGGcAGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 47551 | 0.69 | 0.784466 |
Target: 5'- gGCgCGGCgaagUUGGCGUGCCCGUCgcgCAu -3' miRNA: 3'- gCG-GUUGa---GGUCGUACGGGCAGaa-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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