Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23775 | 5' | -55.3 | NC_005261.1 | + | 61002 | 0.67 | 0.861959 |
Target: 5'- gCGCCuccgGCUCCGGCAU-CgCCGUCg--- -3' miRNA: 3'- -GCGGu---UGAGGUCGUAcG-GGCAGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 5114 | 0.67 | 0.85411 |
Target: 5'- cCGCCAGCUCgGcGCGggcgGCCCGcCggCGc -3' miRNA: 3'- -GCGGUUGAGgU-CGUa---CGGGCaGaaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 104797 | 0.67 | 0.85411 |
Target: 5'- uCGCguGCUCCAGCggGuCCCGcUCcgCAg -3' miRNA: 3'- -GCGguUGAGGUCGuaC-GGGC-AGaaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 108658 | 0.67 | 0.846054 |
Target: 5'- cCGCCAGCcCCGGCGU-CgCGUCcUCGu -3' miRNA: 3'- -GCGGUUGaGGUCGUAcGgGCAGaAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 106773 | 0.67 | 0.846054 |
Target: 5'- uGCCGGCggCCAGCccaGCgCCGUCUg-- -3' miRNA: 3'- gCGGUUGa-GGUCGua-CG-GGCAGAagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 19867 | 0.67 | 0.837796 |
Target: 5'- gCGCgaGACcccgCCGGCggGCCCGUCgUCGc -3' miRNA: 3'- -GCGg-UUGa---GGUCGuaCGGGCAGaAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 111046 | 0.67 | 0.837796 |
Target: 5'- gCGCUAcaAgUCCuGCgacGUGCCCGUCgUCAg -3' miRNA: 3'- -GCGGU--UgAGGuCG---UACGGGCAGaAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 102709 | 0.66 | 0.904344 |
Target: 5'- cCGCCGuCUCCGccGCGUccgcGCCCGccgccagggcguUCUUCAg -3' miRNA: 3'- -GCGGUuGAGGU--CGUA----CGGGC------------AGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 58908 | 0.66 | 0.910581 |
Target: 5'- gCGCCAGCgcgcgcaCCAGCGcGCCCG-Cg--- -3' miRNA: 3'- -GCGGUUGa------GGUCGUaCGGGCaGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 124405 | 0.66 | 0.910581 |
Target: 5'- aGCCGguACUgCAGCGccaugGCCUG-CUUCAu -3' miRNA: 3'- gCGGU--UGAgGUCGUa----CGGGCaGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 12351 | 0.66 | 0.910581 |
Target: 5'- cCGCCGccGCggCGGCAaccgGCgCGUCUUCGa -3' miRNA: 3'- -GCGGU--UGagGUCGUa---CGgGCAGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 50516 | 0.66 | 0.916573 |
Target: 5'- aGCCAGCg-CAGCAggGCCguCGUCUUg- -3' miRNA: 3'- gCGGUUGagGUCGUa-CGG--GCAGAAgu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 3343 | 0.66 | 0.904344 |
Target: 5'- gCGCCGcggcGC-CCGGCGcGCCgGcCUUCAg -3' miRNA: 3'- -GCGGU----UGaGGUCGUaCGGgCaGAAGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 62623 | 0.66 | 0.897864 |
Target: 5'- gGCCAucaGCgCCAGCGUGUCCGgcg-CGa -3' miRNA: 3'- gCGGU---UGaGGUCGUACGGGCagaaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 106439 | 0.66 | 0.891146 |
Target: 5'- aCGCCcGC-CCAGUcgGCCaCGUCcgCGc -3' miRNA: 3'- -GCGGuUGaGGUCGuaCGG-GCAGaaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 13068 | 0.66 | 0.891146 |
Target: 5'- uGCCGggcGCgUCC-GCcgGCCCGUCggCGg -3' miRNA: 3'- gCGGU---UG-AGGuCGuaCGGGCAGaaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 77858 | 0.66 | 0.891146 |
Target: 5'- aGCCGGCUCCA-CAcGCCC-UCUcCAg -3' miRNA: 3'- gCGGUUGAGGUcGUaCGGGcAGAaGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 65263 | 0.66 | 0.884191 |
Target: 5'- uCGCCGGgUUCAGCcgGUGCCgGUCcacgcUCAg -3' miRNA: 3'- -GCGGUUgAGGUCG--UACGGgCAGa----AGU- -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 1669 | 0.66 | 0.884191 |
Target: 5'- gGCCAugUCCuuGC--GCCCGUCg--- -3' miRNA: 3'- gCGGUugAGGu-CGuaCGGGCAGaagu -5' |
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23775 | 5' | -55.3 | NC_005261.1 | + | 66213 | 0.66 | 0.884191 |
Target: 5'- gCGCCAGCacgccgcCCAGCAgccgcugcuugaUGCCCGcCgucgUCAc -3' miRNA: 3'- -GCGGUUGa------GGUCGU------------ACGGGCaGa---AGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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