miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 5' -55.3 NC_005261.1 + 104797 0.67 0.85411
Target:  5'- uCGCguGCUCCAGCggGuCCCGcUCcgCAg -3'
miRNA:   3'- -GCGguUGAGGUCGuaC-GGGC-AGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 5114 0.67 0.85411
Target:  5'- cCGCCAGCUCgGcGCGggcgGCCCGcCggCGc -3'
miRNA:   3'- -GCGGUUGAGgU-CGUa---CGGGCaGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 108658 0.67 0.846054
Target:  5'- cCGCCAGCcCCGGCGU-CgCGUCcUCGu -3'
miRNA:   3'- -GCGGUUGaGGUCGUAcGgGCAGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 106773 0.67 0.846054
Target:  5'- uGCCGGCggCCAGCccaGCgCCGUCUg-- -3'
miRNA:   3'- gCGGUUGa-GGUCGua-CG-GGCAGAagu -5'
23775 5' -55.3 NC_005261.1 + 19867 0.67 0.837796
Target:  5'- gCGCgaGACcccgCCGGCggGCCCGUCgUCGc -3'
miRNA:   3'- -GCGg-UUGa---GGUCGuaCGGGCAGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 111046 0.67 0.837796
Target:  5'- gCGCUAcaAgUCCuGCgacGUGCCCGUCgUCAg -3'
miRNA:   3'- -GCGGU--UgAGGuCG---UACGGGCAGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 12111 0.68 0.829344
Target:  5'- gCGCCAGCUCUAGCGccaggauggcGCCCGcCg--- -3'
miRNA:   3'- -GCGGUUGAGGUCGUa---------CGGGCaGaagu -5'
23775 5' -55.3 NC_005261.1 + 118249 0.68 0.829344
Target:  5'- aCGCCGuCUgCGGCGUGCCgGUgcacugcgcgcaCUUCGu -3'
miRNA:   3'- -GCGGUuGAgGUCGUACGGgCA------------GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 4164 0.68 0.829344
Target:  5'- gCGCCAGCUgCAGguccggGCCCGcgagCUUCGc -3'
miRNA:   3'- -GCGGUUGAgGUCgua---CGGGCa---GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 74622 0.68 0.828489
Target:  5'- gCGCCGGCcuUCCcgcugcgcuucugGGaCGaGCCCGUCUUCGc -3'
miRNA:   3'- -GCGGUUG--AGG-------------UC-GUaCGGGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 82729 0.68 0.820706
Target:  5'- aCGCCG--UCCAGCcgcgccaGCCCGUCUgCGa -3'
miRNA:   3'- -GCGGUugAGGUCGua-----CGGGCAGAaGU- -5'
23775 5' -55.3 NC_005261.1 + 2137 0.68 0.820706
Target:  5'- gCGCUcACgUCCGGCGcGCCCGUCc--- -3'
miRNA:   3'- -GCGGuUG-AGGUCGUaCGGGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 84776 0.68 0.820706
Target:  5'- gGCC-GCUCCAGU-UGCCCGcCUg-- -3'
miRNA:   3'- gCGGuUGAGGUCGuACGGGCaGAagu -5'
23775 5' -55.3 NC_005261.1 + 75075 0.68 0.820706
Target:  5'- gCGCCGGCgggggCuCGGCggGCaUCGUCUUCGg -3'
miRNA:   3'- -GCGGUUGa----G-GUCGuaCG-GGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 53722 0.68 0.820706
Target:  5'- gGCCAGCUgCGGCGcGCCCG-Ca--- -3'
miRNA:   3'- gCGGUUGAgGUCGUaCGGGCaGaagu -5'
23775 5' -55.3 NC_005261.1 + 103108 0.68 0.811891
Target:  5'- gGCCAGCgcccccggcgCCAGCGcGCCCGggUUCu -3'
miRNA:   3'- gCGGUUGa---------GGUCGUaCGGGCagAAGu -5'
23775 5' -55.3 NC_005261.1 + 78879 0.68 0.811
Target:  5'- gCGUCAGCcgguucgCCAGCAgcgGCCCGcccuuguugcucuUCUUCGc -3'
miRNA:   3'- -GCGGUUGa------GGUCGUa--CGGGC-------------AGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 108211 0.68 0.793762
Target:  5'- gCGCCAgcacggcgcGCUCCAGCAuggcgcacgUGCCCGg----- -3'
miRNA:   3'- -GCGGU---------UGAGGUCGU---------ACGGGCagaagu -5'
23775 5' -55.3 NC_005261.1 + 47551 0.69 0.784466
Target:  5'- gGCgCGGCgaagUUGGCGUGCCCGUCgcgCAu -3'
miRNA:   3'- gCG-GUUGa---GGUCGUACGGGCAGaa-GU- -5'
23775 5' -55.3 NC_005261.1 + 99703 0.69 0.784466
Target:  5'- gCGCCAGCUCCGccacggucgcgcGCGUGgCCgCGUCa--- -3'
miRNA:   3'- -GCGGUUGAGGU------------CGUAC-GG-GCAGaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.