miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 5' -55.3 NC_005261.1 + 1524 0.75 0.416164
Target:  5'- gCGCCAGCUCCAGCGcGCgCCGcCcgCAg -3'
miRNA:   3'- -GCGGUUGAGGUCGUaCG-GGCaGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 1669 0.66 0.884191
Target:  5'- gGCCAugUCCuuGC--GCCCGUCg--- -3'
miRNA:   3'- gCGGUugAGGu-CGuaCGGGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 2137 0.68 0.820706
Target:  5'- gCGCUcACgUCCGGCGcGCCCGUCc--- -3'
miRNA:   3'- -GCGGuUG-AGGUCGUaCGGGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 3343 0.66 0.904344
Target:  5'- gCGCCGcggcGC-CCGGCGcGCCgGcCUUCAg -3'
miRNA:   3'- -GCGGU----UGaGGUCGUaCGGgCaGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 4164 0.68 0.829344
Target:  5'- gCGCCAGCUgCAGguccggGCCCGcgagCUUCGc -3'
miRNA:   3'- -GCGGUUGAgGUCgua---CGGGCa---GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 4455 0.71 0.654216
Target:  5'- gGCC--CUCCAGCGgcggcgGCCCGUCgcgCGg -3'
miRNA:   3'- gCGGuuGAGGUCGUa-----CGGGCAGaa-GU- -5'
23775 5' -55.3 NC_005261.1 + 5114 0.67 0.85411
Target:  5'- cCGCCAGCUCgGcGCGggcgGCCCGcCggCGc -3'
miRNA:   3'- -GCGGUUGAGgU-CGUa---CGGGCaGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 12111 0.68 0.829344
Target:  5'- gCGCCAGCUCUAGCGccaggauggcGCCCGcCg--- -3'
miRNA:   3'- -GCGGUUGAGGUCGUa---------CGGGCaGaagu -5'
23775 5' -55.3 NC_005261.1 + 12351 0.66 0.910581
Target:  5'- cCGCCGccGCggCGGCAaccgGCgCGUCUUCGa -3'
miRNA:   3'- -GCGGU--UGagGUCGUa---CGgGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 13068 0.66 0.891146
Target:  5'- uGCCGggcGCgUCC-GCcgGCCCGUCggCGg -3'
miRNA:   3'- gCGGU---UG-AGGuCGuaCGGGCAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 13859 0.7 0.7058
Target:  5'- uCGCCGGCgucgCCGGCG-GCCCGg--UCGu -3'
miRNA:   3'- -GCGGUUGa---GGUCGUaCGGGCagaAGU- -5'
23775 5' -55.3 NC_005261.1 + 19867 0.67 0.837796
Target:  5'- gCGCgaGACcccgCCGGCggGCCCGUCgUCGc -3'
miRNA:   3'- -GCGg-UUGa---GGUCGuaCGGGCAGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 20766 0.71 0.633391
Target:  5'- cCGCCGACUU--GUAcgcGCCCGUCUUCGc -3'
miRNA:   3'- -GCGGUUGAGguCGUa--CGGGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 29986 0.71 0.664606
Target:  5'- cCGCCGGCgcgUCCGGCAgcgGCgCGUCUg-- -3'
miRNA:   3'- -GCGGUUG---AGGUCGUa--CGgGCAGAagu -5'
23775 5' -55.3 NC_005261.1 + 37851 0.69 0.765459
Target:  5'- cCGCCGACUUCGGCGUcCCCGa----- -3'
miRNA:   3'- -GCGGUUGAGGUCGUAcGGGCagaagu -5'
23775 5' -55.3 NC_005261.1 + 42113 0.7 0.715961
Target:  5'- uGCCGGC-CCAGCA-GCCCGgCcUCGu -3'
miRNA:   3'- gCGGUUGaGGUCGUaCGGGCaGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 47551 0.69 0.784466
Target:  5'- gGCgCGGCgaagUUGGCGUGCCCGUCgcgCAu -3'
miRNA:   3'- gCG-GUUGa---GGUCGUACGGGCAGaa-GU- -5'
23775 5' -55.3 NC_005261.1 + 50516 0.66 0.916573
Target:  5'- aGCCAGCg-CAGCAggGCCguCGUCUUg- -3'
miRNA:   3'- gCGGUUGagGUCGUa-CGG--GCAGAAgu -5'
23775 5' -55.3 NC_005261.1 + 53722 0.68 0.820706
Target:  5'- gGCCAGCUgCGGCGcGCCCG-Ca--- -3'
miRNA:   3'- gCGGUUGAgGUCGUaCGGGCaGaagu -5'
23775 5' -55.3 NC_005261.1 + 58908 0.66 0.910581
Target:  5'- gCGCCAGCgcgcgcaCCAGCGcGCCCG-Cg--- -3'
miRNA:   3'- -GCGGUUGa------GGUCGUaCGGGCaGaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.