miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 5' -55.3 NC_005261.1 + 60733 0.71 0.676003
Target:  5'- cCGCguGCUCguGCuacguccucaacaaGCCCGUCUUCAu -3'
miRNA:   3'- -GCGguUGAGguCGua------------CGGGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 61002 0.67 0.861959
Target:  5'- gCGCCuccgGCUCCGGCAU-CgCCGUCg--- -3'
miRNA:   3'- -GCGGu---UGAGGUCGUAcG-GGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 61509 0.74 0.500614
Target:  5'- cCGCCGGCcCCGGCGagGCCCGggcCUUCu -3'
miRNA:   3'- -GCGGUUGaGGUCGUa-CGGGCa--GAAGu -5'
23775 5' -55.3 NC_005261.1 + 62623 0.66 0.897864
Target:  5'- gGCCAucaGCgCCAGCGUGUCCGgcg-CGa -3'
miRNA:   3'- gCGGU---UGaGGUCGUACGGGCagaaGU- -5'
23775 5' -55.3 NC_005261.1 + 62988 0.67 0.869592
Target:  5'- gGCCcucCUCCAGCcgGCCC-UCggCGg -3'
miRNA:   3'- gCGGuu-GAGGUCGuaCGGGcAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 64894 0.67 0.869592
Target:  5'- gCGCCGGgUCCAGCA-GCgCGUggUUCAg -3'
miRNA:   3'- -GCGGUUgAGGUCGUaCGgGCAg-AAGU- -5'
23775 5' -55.3 NC_005261.1 + 65263 0.66 0.884191
Target:  5'- uCGCCGGgUUCAGCcgGUGCCgGUCcacgcUCAg -3'
miRNA:   3'- -GCGGUUgAGGUCG--UACGGgCAGa----AGU- -5'
23775 5' -55.3 NC_005261.1 + 66213 0.66 0.884191
Target:  5'- gCGCCAGCacgccgcCCAGCAgccgcugcuugaUGCCCGcCgucgUCAc -3'
miRNA:   3'- -GCGGUUGa------GGUCGU------------ACGGGCaGa---AGU- -5'
23775 5' -55.3 NC_005261.1 + 70926 0.7 0.7058
Target:  5'- gCGCgAGCUCCAGCGccUGCgCGUCc--- -3'
miRNA:   3'- -GCGgUUGAGGUCGU--ACGgGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 74622 0.68 0.828489
Target:  5'- gCGCCGGCcuUCCcgcugcgcuucugGGaCGaGCCCGUCUUCGc -3'
miRNA:   3'- -GCGGUUG--AGG-------------UC-GUaCGGGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 75075 0.68 0.820706
Target:  5'- gCGCCGGCgggggCuCGGCggGCaUCGUCUUCGg -3'
miRNA:   3'- -GCGGUUGa----G-GUCGuaCG-GGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 76503 0.71 0.622973
Target:  5'- gCGCUcGCgcgcgCgAGCAUGCCCGUCUa-- -3'
miRNA:   3'- -GCGGuUGa----GgUCGUACGGGCAGAagu -5'
23775 5' -55.3 NC_005261.1 + 77858 0.66 0.891146
Target:  5'- aGCCGGCUCCA-CAcGCCC-UCUcCAg -3'
miRNA:   3'- gCGGUUGAGGUcGUaCGGGcAGAaGU- -5'
23775 5' -55.3 NC_005261.1 + 78879 0.68 0.811
Target:  5'- gCGUCAGCcgguucgCCAGCAgcgGCCCGcccuuguugcucuUCUUCGc -3'
miRNA:   3'- -GCGGUUGa------GGUCGUa--CGGGC-------------AGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 78985 0.7 0.715961
Target:  5'- gGCCuGCUCCAGCuuaGCCgCGUCa--- -3'
miRNA:   3'- gCGGuUGAGGUCGua-CGG-GCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 82729 0.68 0.820706
Target:  5'- aCGCCG--UCCAGCcgcgccaGCCCGUCUgCGa -3'
miRNA:   3'- -GCGGUugAGGUCGua-----CGGGCAGAaGU- -5'
23775 5' -55.3 NC_005261.1 + 84776 0.68 0.820706
Target:  5'- gGCC-GCUCCAGU-UGCCCGcCUg-- -3'
miRNA:   3'- gCGGuUGAGGUCGuACGGGCaGAagu -5'
23775 5' -55.3 NC_005261.1 + 86309 0.71 0.633391
Target:  5'- uCGCC--CUCCAGCGUGCUggccaCGUaCUUCAg -3'
miRNA:   3'- -GCGGuuGAGGUCGUACGG-----GCA-GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 87994 0.73 0.560885
Target:  5'- gCGCCGGCUCCucccccGGCggGCCCGUUa--- -3'
miRNA:   3'- -GCGGUUGAGG------UCGuaCGGGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 92841 0.69 0.74596
Target:  5'- aGuCCAGCUCCAGCucccggGCCCGgccgCAc -3'
miRNA:   3'- gC-GGUUGAGGUCGua----CGGGCagaaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.