miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 5' -55.3 NC_005261.1 + 130939 0.73 0.560885
Target:  5'- aCGCCAACUCCGGCGcGaCCCc-CUUCu -3'
miRNA:   3'- -GCGGUUGAGGUCGUaC-GGGcaGAAGu -5'
23775 5' -55.3 NC_005261.1 + 130589 0.67 0.869592
Target:  5'- cCGCgCGGCcCCGcGCcugGCCCGUCUUUg -3'
miRNA:   3'- -GCG-GUUGaGGU-CGua-CGGGCAGAAGu -5'
23775 5' -55.3 NC_005261.1 + 129723 0.73 0.536483
Target:  5'- cCGCCGGCUgCAGCGgcagggcggcgggGCCCGgcCUUCAg -3'
miRNA:   3'- -GCGGUUGAgGUCGUa------------CGGGCa-GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 126076 0.69 0.775029
Target:  5'- cCGCCGGCcUCGGCGggcgcGCCCaUCUUCGc -3'
miRNA:   3'- -GCGGUUGaGGUCGUa----CGGGcAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 124405 0.66 0.910581
Target:  5'- aGCCGguACUgCAGCGccaugGCCUG-CUUCAu -3'
miRNA:   3'- gCGGU--UGAgGUCGUa----CGGGCaGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 118249 0.68 0.829344
Target:  5'- aCGCCGuCUgCGGCGUGCCgGUgcacugcgcgcaCUUCGu -3'
miRNA:   3'- -GCGGUuGAgGUCGUACGGgCA------------GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 112056 0.69 0.736051
Target:  5'- aGCCGGCcuUCgGGCGUGCCCucGUCggCGa -3'
miRNA:   3'- gCGGUUG--AGgUCGUACGGG--CAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 111046 0.67 0.837796
Target:  5'- gCGCUAcaAgUCCuGCgacGUGCCCGUCgUCAg -3'
miRNA:   3'- -GCGGU--UgAGGuCG---UACGGGCAGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 108658 0.67 0.846054
Target:  5'- cCGCCAGCcCCGGCGU-CgCGUCcUCGu -3'
miRNA:   3'- -GCGGUUGaGGUCGUAcGgGCAGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 108211 0.68 0.793762
Target:  5'- gCGCCAgcacggcgcGCUCCAGCAuggcgcacgUGCCCGg----- -3'
miRNA:   3'- -GCGGU---------UGAGGUCGU---------ACGGGCagaagu -5'
23775 5' -55.3 NC_005261.1 + 106773 0.67 0.846054
Target:  5'- uGCCGGCggCCAGCccaGCgCCGUCUg-- -3'
miRNA:   3'- gCGGUUGa-GGUCGua-CG-GGCAGAagu -5'
23775 5' -55.3 NC_005261.1 + 106439 0.66 0.891146
Target:  5'- aCGCCcGC-CCAGUcgGCCaCGUCcgCGc -3'
miRNA:   3'- -GCGGuUGaGGUCGuaCGG-GCAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 105082 0.66 0.916573
Target:  5'- cCGCCGACUCC-GCGc-CCCGgacCUUCc -3'
miRNA:   3'- -GCGGUUGAGGuCGUacGGGCa--GAAGu -5'
23775 5' -55.3 NC_005261.1 + 104797 0.67 0.85411
Target:  5'- uCGCguGCUCCAGCggGuCCCGcUCcgCAg -3'
miRNA:   3'- -GCGguUGAGGUCGuaC-GGGC-AGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 103108 0.68 0.811891
Target:  5'- gGCCAGCgcccccggcgCCAGCGcGCCCGggUUCu -3'
miRNA:   3'- gCGGUUGa---------GGUCGUaCGGGCagAAGu -5'
23775 5' -55.3 NC_005261.1 + 102709 0.66 0.904344
Target:  5'- cCGCCGuCUCCGccGCGUccgcGCCCGccgccagggcguUCUUCAg -3'
miRNA:   3'- -GCGGUuGAGGU--CGUA----CGGGC------------AGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 101753 0.67 0.869592
Target:  5'- uCGgCAGCUCCAgguGCAcGCCCGcCUcCAg -3'
miRNA:   3'- -GCgGUUGAGGU---CGUaCGGGCaGAaGU- -5'
23775 5' -55.3 NC_005261.1 + 101204 0.73 0.510477
Target:  5'- cCGCCGACUCCAGC-UGCCgccgcagcgCGUCg--- -3'
miRNA:   3'- -GCGGUUGAGGUCGuACGG---------GCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 101003 0.67 0.861959
Target:  5'- cCGCCAGCcgcgcgUCCAGCGcGCCUGUg---- -3'
miRNA:   3'- -GCGGUUG------AGGUCGUaCGGGCAgaagu -5'
23775 5' -55.3 NC_005261.1 + 99703 0.69 0.784466
Target:  5'- gCGCCAGCUCCGccacggucgcgcGCGUGgCCgCGUCa--- -3'
miRNA:   3'- -GCGGUUGAGGU------------CGUAC-GG-GCAGaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.