miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23775 5' -55.3 NC_005261.1 + 126076 0.69 0.775029
Target:  5'- cCGCCGGCcUCGGCGggcgcGCCCaUCUUCGc -3'
miRNA:   3'- -GCGGUUGaGGUCGUa----CGGGcAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 37851 0.69 0.765459
Target:  5'- cCGCCGACUUCGGCGUcCCCGa----- -3'
miRNA:   3'- -GCGGUUGAGGUCGUAcGGGCagaagu -5'
23775 5' -55.3 NC_005261.1 + 20766 0.71 0.633391
Target:  5'- cCGCCGACUU--GUAcgcGCCCGUCUUCGc -3'
miRNA:   3'- -GCGGUUGAGguCGUa--CGGGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 99124 0.71 0.633391
Target:  5'- gCGCCGagagcuGCUCCAGC-UGCgCCGUCa--- -3'
miRNA:   3'- -GCGGU------UGAGGUCGuACG-GGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 76503 0.71 0.622973
Target:  5'- gCGCUcGCgcgcgCgAGCAUGCCCGUCUa-- -3'
miRNA:   3'- -GCGGuUGa----GgUCGUACGGGCAGAagu -5'
23775 5' -55.3 NC_005261.1 + 130939 0.73 0.560885
Target:  5'- aCGCCAACUCCGGCGcGaCCCc-CUUCu -3'
miRNA:   3'- -GCGGUUGAGGUCGUaC-GGGcaGAAGu -5'
23775 5' -55.3 NC_005261.1 + 87994 0.73 0.560885
Target:  5'- gCGCCGGCUCCucccccGGCggGCCCGUUa--- -3'
miRNA:   3'- -GCGGUUGAGG------UCGuaCGGGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 129723 0.73 0.536483
Target:  5'- cCGCCGGCUgCAGCGgcagggcggcgggGCCCGgcCUUCAg -3'
miRNA:   3'- -GCGGUUGAgGUCGUa------------CGGGCa-GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 101204 0.73 0.510477
Target:  5'- cCGCCGACUCCAGC-UGCCgccgcagcgCGUCg--- -3'
miRNA:   3'- -GCGGUUGAGGUCGuACGG---------GCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 61509 0.74 0.500614
Target:  5'- cCGCCGGCcCCGGCGagGCCCGggcCUUCu -3'
miRNA:   3'- -GCGGUUGaGGUCGUa-CGGGCa--GAAGu -5'
23775 5' -55.3 NC_005261.1 + 86309 0.71 0.633391
Target:  5'- uCGCC--CUCCAGCGUGCUggccaCGUaCUUCAg -3'
miRNA:   3'- -GCGGuuGAGGUCGUACGG-----GCA-GAAGU- -5'
23775 5' -55.3 NC_005261.1 + 4455 0.71 0.654216
Target:  5'- gGCC--CUCCAGCGgcggcgGCCCGUCgcgCGg -3'
miRNA:   3'- gCGGuuGAGGUCGUa-----CGGGCAGaa-GU- -5'
23775 5' -55.3 NC_005261.1 + 92841 0.69 0.74596
Target:  5'- aGuCCAGCUCCAGCucccggGCCCGgccgCAc -3'
miRNA:   3'- gC-GGUUGAGGUCGua----CGGGCagaaGU- -5'
23775 5' -55.3 NC_005261.1 + 112056 0.69 0.736051
Target:  5'- aGCCGGCcuUCgGGCGUGCCCucGUCggCGa -3'
miRNA:   3'- gCGGUUG--AGgUCGUACGGG--CAGaaGU- -5'
23775 5' -55.3 NC_005261.1 + 78985 0.7 0.715961
Target:  5'- gGCCuGCUCCAGCuuaGCCgCGUCa--- -3'
miRNA:   3'- gCGGuUGAGGUCGua-CGG-GCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 42113 0.7 0.715961
Target:  5'- uGCCGGC-CCAGCA-GCCCGgCcUCGu -3'
miRNA:   3'- gCGGUUGaGGUCGUaCGGGCaGaAGU- -5'
23775 5' -55.3 NC_005261.1 + 13859 0.7 0.7058
Target:  5'- uCGCCGGCgucgCCGGCG-GCCCGg--UCGu -3'
miRNA:   3'- -GCGGUUGa---GGUCGUaCGGGCagaAGU- -5'
23775 5' -55.3 NC_005261.1 + 70926 0.7 0.7058
Target:  5'- gCGCgAGCUCCAGCGccUGCgCGUCc--- -3'
miRNA:   3'- -GCGgUUGAGGUCGU--ACGgGCAGaagu -5'
23775 5' -55.3 NC_005261.1 + 60733 0.71 0.676003
Target:  5'- cCGCguGCUCguGCuacguccucaacaaGCCCGUCUUCAu -3'
miRNA:   3'- -GCGguUGAGguCGua------------CGGGCAGAAGU- -5'
23775 5' -55.3 NC_005261.1 + 29986 0.71 0.664606
Target:  5'- cCGCCGGCgcgUCCGGCAgcgGCgCGUCUg-- -3'
miRNA:   3'- -GCGGUUG---AGGUCGUa--CGgGCAGAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.