miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 3' -63.4 NC_005261.1 + 21205 0.67 0.498536
Target:  5'- gCGGAcgcuGGCCCCggCCGCgacggcgggCCCguCGGCu -3'
miRNA:   3'- gGCCU----CCGGGGa-GGCGaua------GGG--GCCG- -5'
23776 3' -63.4 NC_005261.1 + 24411 0.69 0.40352
Target:  5'- cCUGGGGGCUcggauCCUCgGUUgcgGUCCgCGGCg -3'
miRNA:   3'- -GGCCUCCGG-----GGAGgCGA---UAGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 24864 0.79 0.098541
Target:  5'- -gGGAGGCCCCUCCcacggcCUGUCCCCgcccccuugcccGGCg -3'
miRNA:   3'- ggCCUCCGGGGAGGc-----GAUAGGGG------------CCG- -5'
23776 3' -63.4 NC_005261.1 + 25344 0.66 0.560085
Target:  5'- -gGGGGGCCCUccccacaaacCCGCUuggaacaaaaaCCCGGCa -3'
miRNA:   3'- ggCCUCCGGGGa---------GGCGAuag--------GGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 27455 0.66 0.580143
Target:  5'- gCGGcGGGCCgCC-CCGCggggcgggcaggcccUCCCCGGg -3'
miRNA:   3'- gGCC-UCCGG-GGaGGCGau-------------AGGGGCCg -5'
23776 3' -63.4 NC_005261.1 + 27996 0.68 0.476893
Target:  5'- cCCGccGGCCUCUCCGCgaaagggggCCGGCg -3'
miRNA:   3'- -GGCcuCCGGGGAGGCGauagg----GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 28198 0.74 0.199534
Target:  5'- gCCGGcGGCCUCgccgCCGCUG-CCgCGGCc -3'
miRNA:   3'- -GGCCuCCGGGGa---GGCGAUaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 28723 0.69 0.39546
Target:  5'- cCCGGGGGCCUCggCGCccUCCgaGGCc -3'
miRNA:   3'- -GGCCUCCGGGGagGCGauAGGggCCG- -5'
23776 3' -63.4 NC_005261.1 + 28766 0.69 0.39546
Target:  5'- gCCGGGGGCgCCUgggCCGCgg-CgCgGGCg -3'
miRNA:   3'- -GGCCUCCG-GGGa--GGCGauaGgGgCCG- -5'
23776 3' -63.4 NC_005261.1 + 29047 0.67 0.544932
Target:  5'- aCGGGGGCCg--CCGCcg-CCgCGGCc -3'
miRNA:   3'- gGCCUCCGGggaGGCGauaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 29271 0.73 0.245766
Target:  5'- gCUGGAGGgCCCgCUGCUGacgccCUCCGGCg -3'
miRNA:   3'- -GGCCUCCgGGGaGGCGAUa----GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 30703 0.69 0.40352
Target:  5'- -gGGAGGCCCg-CgGgaG-CCCCGGCg -3'
miRNA:   3'- ggCCUCCGGGgaGgCgaUaGGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 30906 0.7 0.356005
Target:  5'- gCUGGGgccgcccGGCCCCUCC-Cgg-CCgCCGGCg -3'
miRNA:   3'- -GGCCU-------CCGGGGAGGcGauaGG-GGCCG- -5'
23776 3' -63.4 NC_005261.1 + 31106 0.67 0.526183
Target:  5'- cCCGGcGGCCCCgCCGCcga---CGGCg -3'
miRNA:   3'- -GGCCuCCGGGGaGGCGauagggGCCG- -5'
23776 3' -63.4 NC_005261.1 + 31919 0.7 0.349336
Target:  5'- cCCGG-GGCgCCgCCGCUGggcucugCCgCGGCg -3'
miRNA:   3'- -GGCCuCCGgGGaGGCGAUa------GGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 32292 0.67 0.535529
Target:  5'- gCUGGAGGCgggcgccgccCCCgccgccgCCGCgg-CCgCGGCg -3'
miRNA:   3'- -GGCCUCCG----------GGGa------GGCGauaGGgGCCG- -5'
23776 3' -63.4 NC_005261.1 + 32512 0.75 0.190346
Target:  5'- gCGGGGGgUCCgcgCCGCgcccggCCCCGGCc -3'
miRNA:   3'- gGCCUCCgGGGa--GGCGaua---GGGGCCG- -5'
23776 3' -63.4 NC_005261.1 + 33627 0.68 0.445334
Target:  5'- cCCGGGGGCgCgCC-CCGCaccccgcCCCCGcGCg -3'
miRNA:   3'- -GGCCUCCG-G-GGaGGCGaua----GGGGC-CG- -5'
23776 3' -63.4 NC_005261.1 + 33753 0.68 0.453985
Target:  5'- gCCGGggccGGGCCCgCU-CGCggggCCCgCGGCg -3'
miRNA:   3'- -GGCC----UCCGGG-GAgGCGaua-GGG-GCCG- -5'
23776 3' -63.4 NC_005261.1 + 33861 0.77 0.1359
Target:  5'- gCCGGgaGGGCCCCccgCCGCccgCCuCCGGCg -3'
miRNA:   3'- -GGCC--UCCGGGGa--GGCGauaGG-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.