miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23776 5' -50.6 NC_005261.1 + 40858 0.66 0.990791
Target:  5'- -gGCGcg-UCCGcgAAGGcCGCCCCg -3'
miRNA:   3'- gaCGCcaaAGGUuaUUUCuGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 67682 0.66 0.990791
Target:  5'- -cGCGGUgagcgcgUCAA-GAAGuccacguCGCCCCCg -3'
miRNA:   3'- gaCGCCAaa-----GGUUaUUUCu------GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 84553 0.66 0.989472
Target:  5'- -cGCGGgc-CCAGcgccUGGAGcACGgCCCCg -3'
miRNA:   3'- gaCGCCaaaGGUU----AUUUC-UGCgGGGG- -5'
23776 5' -50.6 NC_005261.1 + 126726 0.66 0.989472
Target:  5'- gUGCGcGUUcaagUCCAAgcguccGCGUCCCCa -3'
miRNA:   3'- gACGC-CAA----AGGUUauuuc-UGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 14131 0.66 0.989332
Target:  5'- -gGCGGUgggCAGUcgcucgcGAGGACGCUCCa -3'
miRNA:   3'- gaCGCCAaagGUUA-------UUUCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 80885 0.67 0.98801
Target:  5'- -cGCGGgcUUCAGc---GGCGCCuCCCa -3'
miRNA:   3'- gaCGCCaaAGGUUauuuCUGCGG-GGG- -5'
23776 5' -50.6 NC_005261.1 + 74451 0.67 0.986396
Target:  5'- -gGCGGgg---GGUGGGGGCGCCgCCCc -3'
miRNA:   3'- gaCGCCaaaggUUAUUUCUGCGG-GGG- -5'
23776 5' -50.6 NC_005261.1 + 5579 0.67 0.986396
Target:  5'- aUGgGGgcgCCGA---GGGCGCCCgCCu -3'
miRNA:   3'- gACgCCaaaGGUUauuUCUGCGGG-GG- -5'
23776 5' -50.6 NC_005261.1 + 85841 0.67 0.986396
Target:  5'- gUGUGGUUggCCucGUAGAG-CGCCUCg -3'
miRNA:   3'- gACGCCAAa-GGu-UAUUUCuGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 97258 0.67 0.986396
Target:  5'- -cGCGGggUCgGGUGgcGGGACGUacaugcccgacaCCCCg -3'
miRNA:   3'- gaCGCCaaAGgUUAU--UUCUGCG------------GGGG- -5'
23776 5' -50.6 NC_005261.1 + 37610 0.67 0.98535
Target:  5'- cCUGCaGc-UCCGGUGAuggccucuacgccuaGcGGCGCCCCCa -3'
miRNA:   3'- -GACGcCaaAGGUUAUU---------------U-CUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 128185 0.67 0.98535
Target:  5'- uCUGCGGUcUUgCGGUugcucaacccCGCCCCCg -3'
miRNA:   3'- -GACGCCA-AAgGUUAuuucu-----GCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 59666 0.67 0.98462
Target:  5'- aCUGCGGccgggUCGucGAAGcCGCCCUCg -3'
miRNA:   3'- -GACGCCaaa--GGUuaUUUCuGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 97901 0.67 0.98462
Target:  5'- -gGCGGaccgUCUGGgcgccGGGCGUCCCCg -3'
miRNA:   3'- gaCGCCaa--AGGUUauu--UCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 109563 0.67 0.98462
Target:  5'- -cGCGGccccccucgCCGcUGccGACGCCCCUg -3'
miRNA:   3'- gaCGCCaaa------GGUuAUuuCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 131558 0.67 0.98462
Target:  5'- -gGCGGUcgCCGucgcccGGCuGCCCCCc -3'
miRNA:   3'- gaCGCCAaaGGUuauuu-CUG-CGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 53585 0.67 0.98462
Target:  5'- -cGCGGg--CCGGc---GGCGCCCCa -3'
miRNA:   3'- gaCGCCaaaGGUUauuuCUGCGGGGg -5'
23776 5' -50.6 NC_005261.1 + 60211 0.67 0.982673
Target:  5'- -cGCGcgcUCCcgccgcGGGGCGCCCCCa -3'
miRNA:   3'- gaCGCcaaAGGuuau--UUCUGCGGGGG- -5'
23776 5' -50.6 NC_005261.1 + 100965 0.67 0.982673
Target:  5'- -cGCGGUcUCgug-GAAGGCGCCCa- -3'
miRNA:   3'- gaCGCCAaAGguuaUUUCUGCGGGgg -5'
23776 5' -50.6 NC_005261.1 + 2765 0.67 0.980546
Target:  5'- -gGCGGg--CCuc-GAGGccCGCCCCCg -3'
miRNA:   3'- gaCGCCaaaGGuuaUUUCu-GCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.