Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23777 | 3' | -55 | NC_005261.1 | + | 135077 | 0.67 | 0.899832 |
Target: 5'- uUCCgGCGgcggGCUCG-CGgcccGGCGGCGGa -3' miRNA: 3'- -AGG-CGUa---UGAGCaGCaga-CUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 94468 | 0.67 | 0.912131 |
Target: 5'- cUCCGCGUcggCGUCGUCccGCGGgcCGGg -3' miRNA: 3'- -AGGCGUAugaGCAGCAGacUGCC--GCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 122607 | 0.67 | 0.912131 |
Target: 5'- gCCGCGUugUCGUgccUGUgcUUGAaCGGCGa -3' miRNA: 3'- aGGCGUAugAGCA---GCA--GACU-GCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 64516 | 0.67 | 0.912131 |
Target: 5'- cCCGCGggcgGCUCcUCGUCgGGgGGCaGGu -3' miRNA: 3'- aGGCGUa---UGAGcAGCAGaCUgCCG-CC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 10388 | 0.67 | 0.917361 |
Target: 5'- gCCGCGcGCUCGUCGgcuucuuUCUGcuCGGCc- -3' miRNA: 3'- aGGCGUaUGAGCAGC-------AGACu-GCCGcc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 57581 | 0.67 | 0.91793 |
Target: 5'- gCCGCGUugaGCgCGUCGaugugccacCUGGCGGCGc -3' miRNA: 3'- aGGCGUA---UGaGCAGCa--------GACUGCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 20541 | 0.67 | 0.91793 |
Target: 5'- aCCGCGcucUGCUgGaCGU--GGCGGCGGg -3' miRNA: 3'- aGGCGU---AUGAgCaGCAgaCUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 97675 | 0.67 | 0.899832 |
Target: 5'- gUCCGCGggGCUUGggCGgggCUGccgggGCGGUGGg -3' miRNA: 3'- -AGGCGUa-UGAGCa-GCa--GAC-----UGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 68208 | 0.67 | 0.923493 |
Target: 5'- gCCGCcgGCgCGgccgacaacggCGaccCUGACGGCGGg -3' miRNA: 3'- aGGCGuaUGaGCa----------GCa--GACUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 13127 | 0.67 | 0.923493 |
Target: 5'- gCCGCGggGCgcgUGUgGUCggUGACGGCGc -3' miRNA: 3'- aGGCGUa-UGa--GCAgCAG--ACUGCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 115977 | 0.67 | 0.91793 |
Target: 5'- cUCCGagguGUAgUCGUCG-CUGACgagccgcccgaGGCGGc -3' miRNA: 3'- -AGGCg---UAUgAGCAGCaGACUG-----------CCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 108672 | 0.67 | 0.91793 |
Target: 5'- gUCGCGUcCUCGUCGUCcGGCu-CGGg -3' miRNA: 3'- aGGCGUAuGAGCAGCAGaCUGccGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 102337 | 0.68 | 0.893336 |
Target: 5'- gCCGCGccaGCUCGgccgCGUC-GAaGGCGGa -3' miRNA: 3'- aGGCGUa--UGAGCa---GCAGaCUgCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 98038 | 0.68 | 0.872506 |
Target: 5'- gCCGCgGUACUgG-CGgccgCgGGCGGCGGg -3' miRNA: 3'- aGGCG-UAUGAgCaGCa---GaCUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 129984 | 0.68 | 0.878963 |
Target: 5'- gUCgCGCAUGCgcugggCGuccuguaugugcuUCGUCacGACGGCGGu -3' miRNA: 3'- -AG-GCGUAUGa-----GC-------------AGCAGa-CUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 46229 | 0.68 | 0.879669 |
Target: 5'- gCCGCGUGgaCGagcgCGUCgcaggccgcGGCGGCGGc -3' miRNA: 3'- aGGCGUAUgaGCa---GCAGa--------CUGCCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 118239 | 0.68 | 0.879669 |
Target: 5'- gCCGCGgcCUaCGcCGUCUG-CGGCGu -3' miRNA: 3'- aGGCGUauGA-GCaGCAGACuGCCGCc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 129 | 0.68 | 0.893336 |
Target: 5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3' miRNA: 3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 21221 | 0.68 | 0.893336 |
Target: 5'- gCCGCGacgGCgggccCGUCGgCUGGCGGCu- -3' miRNA: 3'- aGGCGUa--UGa----GCAGCaGACUGCCGcc -5' |
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23777 | 3' | -55 | NC_005261.1 | + | 137812 | 0.68 | 0.893336 |
Target: 5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3' miRNA: 3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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