miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 3' -55 NC_005261.1 + 118077 0.72 0.703923
Target:  5'- gCCGCAgccgcGCUCGUCuG-CUGGCGGCc- -3'
miRNA:   3'- aGGCGUa----UGAGCAG-CaGACUGCCGcc -5'
23777 3' -55 NC_005261.1 + 118660 0.72 0.693917
Target:  5'- gCCGCGcGCUCGggG-CUGAgGGCGGc -3'
miRNA:   3'- aGGCGUaUGAGCagCaGACUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 128779 0.72 0.692913
Target:  5'- aCUGCGcGC-CGUUGUCUGggcgcccgggcccGCGGCGGg -3'
miRNA:   3'- aGGCGUaUGaGCAGCAGAC-------------UGCCGCC- -5'
23777 3' -55 NC_005261.1 + 104179 0.72 0.67376
Target:  5'- gCCGCGcGCggGUCGUCgggcggGACGGCGu -3'
miRNA:   3'- aGGCGUaUGagCAGCAGa-----CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 127363 0.73 0.612747
Target:  5'- cCCGCGUgGCUaggaUGUCG-UUGGCGGCGGc -3'
miRNA:   3'- aGGCGUA-UGA----GCAGCaGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 27434 0.69 0.841778
Target:  5'- -gCGCAUAUUacaaugaGUUUGGCGGCGGg -3'
miRNA:   3'- agGCGUAUGAgcag---CAGACUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 2261 0.69 0.841778
Target:  5'- gCCGCcggcGCUCGUCcUCgccgGGCGGCGc -3'
miRNA:   3'- aGGCGua--UGAGCAGcAGa---CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 102337 0.68 0.893336
Target:  5'- gCCGCGccaGCUCGgccgCGUC-GAaGGCGGa -3'
miRNA:   3'- aGGCGUa--UGAGCa---GCAGaCUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 21221 0.68 0.893336
Target:  5'- gCCGCGacgGCgggccCGUCGgCUGGCGGCu- -3'
miRNA:   3'- aGGCGUa--UGa----GCAGCaGACUGCCGcc -5'
23777 3' -55 NC_005261.1 + 129 0.68 0.893336
Target:  5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3'
miRNA:   3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5'
23777 3' -55 NC_005261.1 + 98580 0.68 0.886614
Target:  5'- cUCCGCGgGCUCGggCGagUaGGCGGCGc -3'
miRNA:   3'- -AGGCGUaUGAGCa-GCagA-CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 118239 0.68 0.879669
Target:  5'- gCCGCGgcCUaCGcCGUCUG-CGGCGu -3'
miRNA:   3'- aGGCGUauGA-GCaGCAGACuGCCGCc -5'
23777 3' -55 NC_005261.1 + 46229 0.68 0.879669
Target:  5'- gCCGCGUGgaCGagcgCGUCgcaggccgcGGCGGCGGc -3'
miRNA:   3'- aGGCGUAUgaGCa---GCAGa--------CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 129984 0.68 0.878963
Target:  5'- gUCgCGCAUGCgcugggCGuccuguaugugcuUCGUCacGACGGCGGu -3'
miRNA:   3'- -AG-GCGUAUGa-----GC-------------AGCAGa-CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 98038 0.68 0.872506
Target:  5'- gCCGCgGUACUgG-CGgccgCgGGCGGCGGg -3'
miRNA:   3'- aGGCG-UAUGAgCaGCa---GaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 60165 0.68 0.871778
Target:  5'- gCCGC-UGC-CGUggaagcgCGUCUGcgccGCGGCGGa -3'
miRNA:   3'- aGGCGuAUGaGCA-------GCAGAC----UGCCGCC- -5'
23777 3' -55 NC_005261.1 + 103492 0.68 0.86513
Target:  5'- -gCGCA-AgaCGUCGUCggcgccgcgGACGGCGGc -3'
miRNA:   3'- agGCGUaUgaGCAGCAGa--------CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 16382 0.68 0.864381
Target:  5'- cUCCGUggGCcucgccgUCGUCGUCgccgGGCGGUGcGg -3'
miRNA:   3'- -AGGCGuaUG-------AGCAGCAGa---CUGCCGC-C- -5'
23777 3' -55 NC_005261.1 + 93653 0.68 0.857546
Target:  5'- gUCCGCGUACgcccacCGgucCG-CgGGCGGCGGc -3'
miRNA:   3'- -AGGCGUAUGa-----GCa--GCaGaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 60033 0.69 0.84976
Target:  5'- cCCGCc-GC-CGUCGgcgCcGACGGCGGc -3'
miRNA:   3'- aGGCGuaUGaGCAGCa--GaCUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.