miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 3' -55 NC_005261.1 + 57581 0.67 0.91793
Target:  5'- gCCGCGUugaGCgCGUCGaugugccacCUGGCGGCGc -3'
miRNA:   3'- aGGCGUA---UGaGCAGCa--------GACUGCCGCc -5'
23777 3' -55 NC_005261.1 + 20541 0.67 0.91793
Target:  5'- aCCGCGcucUGCUgGaCGU--GGCGGCGGg -3'
miRNA:   3'- aGGCGU---AUGAgCaGCAgaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 115977 0.67 0.91793
Target:  5'- cUCCGagguGUAgUCGUCG-CUGACgagccgcccgaGGCGGc -3'
miRNA:   3'- -AGGCg---UAUgAGCAGCaGACUG-----------CCGCC- -5'
23777 3' -55 NC_005261.1 + 108672 0.67 0.91793
Target:  5'- gUCGCGUcCUCGUCGUCcGGCu-CGGg -3'
miRNA:   3'- aGGCGUAuGAGCAGCAGaCUGccGCC- -5'
23777 3' -55 NC_005261.1 + 10388 0.67 0.917361
Target:  5'- gCCGCGcGCUCGUCGgcuucuuUCUGcuCGGCc- -3'
miRNA:   3'- aGGCGUaUGAGCAGC-------AGACu-GCCGcc -5'
23777 3' -55 NC_005261.1 + 64516 0.67 0.912131
Target:  5'- cCCGCGggcgGCUCcUCGUCgGGgGGCaGGu -3'
miRNA:   3'- aGGCGUa---UGAGcAGCAGaCUgCCG-CC- -5'
23777 3' -55 NC_005261.1 + 122607 0.67 0.912131
Target:  5'- gCCGCGUugUCGUgccUGUgcUUGAaCGGCGa -3'
miRNA:   3'- aGGCGUAugAGCA---GCA--GACU-GCCGCc -5'
23777 3' -55 NC_005261.1 + 94468 0.67 0.912131
Target:  5'- cUCCGCGUcggCGUCGUCccGCGGgcCGGg -3'
miRNA:   3'- -AGGCGUAugaGCAGCAGacUGCC--GCC- -5'
23777 3' -55 NC_005261.1 + 74829 0.67 0.906098
Target:  5'- gCCGcCGUGCUCG-CGgacCUGGggaGGCGGc -3'
miRNA:   3'- aGGC-GUAUGAGCaGCa--GACUg--CCGCC- -5'
23777 3' -55 NC_005261.1 + 24370 0.67 0.906098
Target:  5'- gUCgGCgGUGCUCccggugggcUCGUC-GGCGGCGGg -3'
miRNA:   3'- -AGgCG-UAUGAGc--------AGCAGaCUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 135077 0.67 0.899832
Target:  5'- uUCCgGCGgcggGCUCG-CGgcccGGCGGCGGa -3'
miRNA:   3'- -AGG-CGUa---UGAGCaGCaga-CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 97675 0.67 0.899832
Target:  5'- gUCCGCGggGCUUGggCGgggCUGccgggGCGGUGGg -3'
miRNA:   3'- -AGGCGUa-UGAGCa-GCa--GAC-----UGCCGCC- -5'
23777 3' -55 NC_005261.1 + 137812 0.68 0.893336
Target:  5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3'
miRNA:   3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5'
23777 3' -55 NC_005261.1 + 21221 0.68 0.893336
Target:  5'- gCCGCGacgGCgggccCGUCGgCUGGCGGCu- -3'
miRNA:   3'- aGGCGUa--UGa----GCAGCaGACUGCCGcc -5'
23777 3' -55 NC_005261.1 + 129 0.68 0.893336
Target:  5'- gCCGCcccugGUGCUCG-CGgggCUGGCagggcuGGCGGa -3'
miRNA:   3'- aGGCG-----UAUGAGCaGCa--GACUG------CCGCC- -5'
23777 3' -55 NC_005261.1 + 102337 0.68 0.893336
Target:  5'- gCCGCGccaGCUCGgccgCGUC-GAaGGCGGa -3'
miRNA:   3'- aGGCGUa--UGAGCa---GCAGaCUgCCGCC- -5'
23777 3' -55 NC_005261.1 + 98580 0.68 0.886614
Target:  5'- cUCCGCGgGCUCGggCGagUaGGCGGCGc -3'
miRNA:   3'- -AGGCGUaUGAGCa-GCagA-CUGCCGCc -5'
23777 3' -55 NC_005261.1 + 46229 0.68 0.879669
Target:  5'- gCCGCGUGgaCGagcgCGUCgcaggccgcGGCGGCGGc -3'
miRNA:   3'- aGGCGUAUgaGCa---GCAGa--------CUGCCGCC- -5'
23777 3' -55 NC_005261.1 + 118239 0.68 0.879669
Target:  5'- gCCGCGgcCUaCGcCGUCUG-CGGCGu -3'
miRNA:   3'- aGGCGUauGA-GCaGCAGACuGCCGCc -5'
23777 3' -55 NC_005261.1 + 129984 0.68 0.878963
Target:  5'- gUCgCGCAUGCgcugggCGuccuguaugugcuUCGUCacGACGGCGGu -3'
miRNA:   3'- -AG-GCGUAUGa-----GC-------------AGCAGa-CUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.