miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 134713 0.66 0.622238
Target:  5'- cGGCgCGCCcagaCCCGGCCGggacCCGGacucGGCGAc -3'
miRNA:   3'- -CCG-GUGG----GGGUCGGC----GGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 103575 0.66 0.602626
Target:  5'- cGCCGCCgCCCGcgccgucgcucGCCGCCGuGgccgcGGCGGc -3'
miRNA:   3'- cCGGUGG-GGGU-----------CGGCGGC-Caa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 9870 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5'
23777 5' -62.2 NC_005261.1 + 10544 0.66 0.612425
Target:  5'- uGUCGCCCCCGGCgCGCCuGccgGGCc- -3'
miRNA:   3'- cCGGUGGGGGUCG-GCGGcCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 116054 0.66 0.602626
Target:  5'- uGGCCuugGCgCCCCgcguGGCgCGCCGGUccccGugGAu -3'
miRNA:   3'- -CCGG---UG-GGGG----UCG-GCGGCCAa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 72881 0.66 0.602626
Target:  5'- aGGuCCGCCCC--GCCGCCGGggua-GAg -3'
miRNA:   3'- -CC-GGUGGGGguCGGCGGCCaacugCU- -5'
23777 5' -62.2 NC_005261.1 + 131806 0.66 0.640894
Target:  5'- cGCCGCgCCUGacggcgcGCCGCCGcUUGACGc -3'
miRNA:   3'- cCGGUGgGGGU-------CGGCGGCcAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 30773 0.66 0.632057
Target:  5'- gGGCCGgagCCCGGCCGC-GGcgGugGAg -3'
miRNA:   3'- -CCGGUgg-GGGUCGGCGgCCaaCugCU- -5'
23777 5' -62.2 NC_005261.1 + 87573 0.66 0.645802
Target:  5'- cGUCAgCCCCGcGCCGCCcaggccgguggucuuGGUgccGGCGAc -3'
miRNA:   3'- cCGGUgGGGGU-CGGCGG---------------CCAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 71909 0.66 0.651688
Target:  5'- cGCCGCCggCCAGCaCGUC-GUUGACGu -3'
miRNA:   3'- cCGGUGGg-GGUCG-GCGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 49189 0.66 0.632057
Target:  5'- cGGCCagGCCCUCGGCCGacagCGag-GGCGGg -3'
miRNA:   3'- -CCGG--UGGGGGUCGGCg---GCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 109831 0.66 0.641876
Target:  5'- cGGCCGCCgaaucuggCguGCCGuuGGU-GGCGGc -3'
miRNA:   3'- -CCGGUGGg-------GguCGGCggCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 3385 0.66 0.622238
Target:  5'- cGGCCGCCagccgcgCCGGCacuucCGCCGGcgGGCuGAa -3'
miRNA:   3'- -CCGGUGGg------GGUCG-----GCGGCCaaCUG-CU- -5'
23777 5' -62.2 NC_005261.1 + 127327 0.66 0.651688
Target:  5'- uGCCGCCCgCGGggGCCGGagcGGCGGg -3'
miRNA:   3'- cCGGUGGGgGUCggCGGCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 35737 0.66 0.651688
Target:  5'- aGGCCACCUgggccgaagCCAGCCGCgaaggCGGcucgGGcCGAg -3'
miRNA:   3'- -CCGGUGGG---------GGUCGGCG-----GCCaa--CU-GCU- -5'
23777 5' -62.2 NC_005261.1 + 84587 0.66 0.622238
Target:  5'- cGGCCGUCUgcgCCAGCgCGCCGuugcugccGUUGAUGAu -3'
miRNA:   3'- -CCGGUGGG---GGUCG-GCGGC--------CAACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 71002 0.66 0.632057
Target:  5'- cGGCCGCCaggCCAGCuCGCCGcGcaggaaGGCGu -3'
miRNA:   3'- -CCGGUGGg--GGUCG-GCGGC-Caa----CUGCu -5'
23777 5' -62.2 NC_005261.1 + 68663 0.67 0.573376
Target:  5'- cGCCGCCCgC-GCCGCCGGcguccgccgcGugGGg -3'
miRNA:   3'- cCGGUGGGgGuCGGCGGCCaa--------CugCU- -5'
23777 5' -62.2 NC_005261.1 + 121417 0.67 0.554057
Target:  5'- cGGCUGCCgCC-GCCGCUacgGGgcGGCGGg -3'
miRNA:   3'- -CCGGUGGgGGuCGGCGG---CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 117673 0.67 0.554057
Target:  5'- cGCCGCgCCCGGCCGggcCCGc--GGCGAg -3'
miRNA:   3'- cCGGUGgGGGUCGGC---GGCcaaCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.