miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 31108 0.67 0.554057
Target:  5'- cGGCgGCCCC--GCCGCCGac-GGCGGc -3'
miRNA:   3'- -CCGgUGGGGguCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 135353 0.67 0.554057
Target:  5'- cGGuUCGCCCCCgagGGCCGCCgcgucaccuGGgaGACGc -3'
miRNA:   3'- -CC-GGUGGGGG---UCGGCGG---------CCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 129708 0.67 0.573376
Target:  5'- gGGCCggaggcagGCCCgCCGGCUGCagcggcaGGgcGGCGGg -3'
miRNA:   3'- -CCGG--------UGGG-GGUCGGCGg------CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 87952 0.67 0.544469
Target:  5'- cGCCGCCa-CGGcCCGCCGGc-GGCGGg -3'
miRNA:   3'- cCGGUGGggGUC-GGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 136532 0.67 0.583096
Target:  5'- aGGUCcaggauggaGCCCUCGGCCaGCUGGUgggGGCa- -3'
miRNA:   3'- -CCGG---------UGGGGGUCGG-CGGCCAa--CUGcu -5'
23777 5' -62.2 NC_005261.1 + 47609 0.67 0.581149
Target:  5'- aGCCGCCCCCugcgggggcggccgcGGCCGCCGcGcgcaccgcguccuccUcGACGGc -3'
miRNA:   3'- cCGGUGGGGG---------------UCGGCGGC-C---------------AaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68663 0.67 0.573376
Target:  5'- cGCCGCCCgC-GCCGCCGGcguccgccgcGugGGg -3'
miRNA:   3'- cCGGUGGGgGuCGGCGGCCaa--------CugCU- -5'
23777 5' -62.2 NC_005261.1 + 117673 0.67 0.554057
Target:  5'- cGCCGCgCCCGGCCGggcCCGc--GGCGAg -3'
miRNA:   3'- cCGGUGgGGGUCGGC---GGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 98334 0.67 0.592848
Target:  5'- cGGCgCGCCCCguGUCGaCGcGggGGCGGg -3'
miRNA:   3'- -CCG-GUGGGGguCGGCgGC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 58275 0.67 0.562729
Target:  5'- cGCCGCgCUcacggggCCGGCgCGCCGGggGGCGc -3'
miRNA:   3'- cCGGUG-GG-------GGUCG-GCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 1290 0.67 0.563695
Target:  5'- aGGCCggcgggGCUCCC-GUCGCCGGc-GGCGGc -3'
miRNA:   3'- -CCGG------UGGGGGuCGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 22816 0.67 0.573376
Target:  5'- cGGCgCugCCgCC-GCCGCC-GUUGGCGc -3'
miRNA:   3'- -CCG-GugGG-GGuCGGCGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 2705 0.67 0.563695
Target:  5'- uGGCCggcgccggGCCCCUGGCC-CCGGccGACu- -3'
miRNA:   3'- -CCGG--------UGGGGGUCGGcGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 23762 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 23876 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 23819 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 27481 0.68 0.534936
Target:  5'- aGGCCcUCCCCGGgcgcaccuggaCCGCCaGGUcugGGCGGg -3'
miRNA:   3'- -CCGGuGGGGGUC-----------GGCGG-CCAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 63012 0.68 0.47914
Target:  5'- cGGCCGCgCCCgcgcGGgCGCCGGcgcccgcGGCGAg -3'
miRNA:   3'- -CCGGUGgGGG----UCgGCGGCCaa-----CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 123623 0.68 0.534936
Target:  5'- aGGCUGCCCaUCAGCCGCUGc---GCGAu -3'
miRNA:   3'- -CCGGUGGG-GGUCGGCGGCcaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 98159 0.68 0.503922
Target:  5'- aGGCCGCgggcggcgggugugUCCUuggAGCCGCCGGggGcGCGGc -3'
miRNA:   3'- -CCGGUG--------------GGGG---UCGGCGGCCaaC-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.