miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 52445 0.68 0.50671
Target:  5'- gGGCCACgagguCCCCGGCgCGCgucaggaugCGGUUGcgGCGGc -3'
miRNA:   3'- -CCGGUG-----GGGGUCG-GCG---------GCCAAC--UGCU- -5'
23777 5' -62.2 NC_005261.1 + 87794 0.68 0.50671
Target:  5'- uGGCCGCCgcgUCCauGGCCGgCGGggcuggGACGGg -3'
miRNA:   3'- -CCGGUGG---GGG--UCGGCgGCCaa----CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 132078 0.68 0.50671
Target:  5'- cGGCCGCCgUCGccGCUGCCGcGgagGGCGGc -3'
miRNA:   3'- -CCGGUGGgGGU--CGGCGGC-Caa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 97937 0.68 0.516052
Target:  5'- uGGCCGCCagcuCCGGCgGCaacgaGGgaggUGGCGGc -3'
miRNA:   3'- -CCGGUGGg---GGUCGgCGg----CCa---ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 106573 0.68 0.516052
Target:  5'- cGCCGgCCCCggGGCCGCCGcgcGGCGc -3'
miRNA:   3'- cCGGUgGGGG--UCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 132039 0.68 0.516052
Target:  5'- uGGCCGCCCUgGaCC-CCGGggaggUGGCGGc -3'
miRNA:   3'- -CCGGUGGGGgUcGGcGGCCa----ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 67950 0.68 0.516052
Target:  5'- cGGcCCGCUCgCgCGGCCGCCGcGgcGAUGGa -3'
miRNA:   3'- -CC-GGUGGG-G-GUCGGCGGC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 6332 0.68 0.497442
Target:  5'- uGGCCgcguACCCCCuGCCcaccggccucgcGCCGGUccGGCGc -3'
miRNA:   3'- -CCGG----UGGGGGuCGG------------CGGCCAa-CUGCu -5'
23777 5' -62.2 NC_005261.1 + 44254 0.68 0.488251
Target:  5'- cGGCCgACgCCgCGGCgCGCgGGggGGCGGg -3'
miRNA:   3'- -CCGG-UGgGG-GUCG-GCGgCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 33347 0.68 0.488251
Target:  5'- cGCCACCgCCGccaccGCCGCCGGgccGCGc -3'
miRNA:   3'- cCGGUGGgGGU-----CGGCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 61260 0.68 0.532087
Target:  5'- uGGCCGCCUCCGGggccgugcccaugcCCGCCGa--GACGc -3'
miRNA:   3'- -CCGGUGGGGGUC--------------GGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 53367 0.68 0.525462
Target:  5'- cGGCCGCcgCCCCGGCCG-CGGUg----- -3'
miRNA:   3'- -CCGGUG--GGGGUCGGCgGCCAacugcu -5'
23777 5' -62.2 NC_005261.1 + 4881 0.68 0.47914
Target:  5'- cGGCCGCCUCagccgCGGCCGCCucGGcUUcGGCGGc -3'
miRNA:   3'- -CCGGUGGGG-----GUCGGCGG--CC-AA-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 4953 0.68 0.47914
Target:  5'- cGGCCcaggcGCCCCCGGCCGCgGcGUccucUGGgGc -3'
miRNA:   3'- -CCGG-----UGGGGGUCGGCGgC-CA----ACUgCu -5'
23777 5' -62.2 NC_005261.1 + 30556 0.68 0.47914
Target:  5'- aGGCCGCC----GCCGCCGGggccucgGACGGg -3'
miRNA:   3'- -CCGGUGGggguCGGCGGCCaa-----CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 48648 0.68 0.47914
Target:  5'- cGCCgGCCCCCgcccggagAGCCGCgCGGcaacGGCGAc -3'
miRNA:   3'- cCGG-UGGGGG--------UCGGCG-GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 76214 0.68 0.47914
Target:  5'- aGCCGCgCCUGcGCCGCgCGcUUGACGAg -3'
miRNA:   3'- cCGGUGgGGGU-CGGCG-GCcAACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 105466 0.68 0.47914
Target:  5'- cGGCCGCCCUCAGCUcCuCGGggcgcGCGGg -3'
miRNA:   3'- -CCGGUGGGGGUCGGcG-GCCaac--UGCU- -5'
23777 5' -62.2 NC_005261.1 + 63012 0.68 0.47914
Target:  5'- cGGCCGCgCCCgcgcGGgCGCCGGcgcccgcGGCGAg -3'
miRNA:   3'- -CCGGUGgGGG----UCgGCGGCCaa-----CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 109901 0.68 0.488251
Target:  5'- gGGCUacaGCCCCUGGaCCGCCGGgaugcUGcACGu -3'
miRNA:   3'- -CCGG---UGGGGGUC-GGCGGCCa----AC-UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.