miRNA display CGI


Results 21 - 40 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 127078 0.73 0.271854
Target:  5'- uGCCGCCgCCGcGCCGCCGcaaUGACGGc -3'
miRNA:   3'- cCGGUGGgGGU-CGGCGGCca-ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 29324 0.73 0.271854
Target:  5'- cGCCGCCgCCCGGCCGCgugcgcuucggCGGcgcgGGCGAc -3'
miRNA:   3'- cCGGUGG-GGGUCGGCG-----------GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68192 0.73 0.265743
Target:  5'- gGGCCcccucGCCCCC-GCCGCCGGc--GCGGc -3'
miRNA:   3'- -CCGG-----UGGGGGuCGGCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 47690 0.73 0.259744
Target:  5'- cGGCCGCCCgCGG-CGCCGcGUcGGCGGc -3'
miRNA:   3'- -CCGGUGGGgGUCgGCGGC-CAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 77385 0.73 0.259744
Target:  5'- cGGCgCACCCCCuGCCGgCCGGc-GACu- -3'
miRNA:   3'- -CCG-GUGGGGGuCGGC-GGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 106350 0.73 0.253856
Target:  5'- cGuCCGCCCCC-GCCGCCGcGcUGACGc -3'
miRNA:   3'- cC-GGUGGGGGuCGGCGGC-CaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 50011 0.73 0.248078
Target:  5'- cGCCGCCagcgcgcgggcgCCCAGCCGCCGcgcGACGGu -3'
miRNA:   3'- cCGGUGG------------GGGUCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 100383 0.73 0.248078
Target:  5'- aGGCCGCCUCCAccacGCCGCC-GUUGuccaGCGGg -3'
miRNA:   3'- -CCGGUGGGGGU----CGGCGGcCAAC----UGCU- -5'
23777 5' -62.2 NC_005261.1 + 95747 0.72 0.310896
Target:  5'- cGCCGCCgCC-GCCGCCGGg-GGCGc -3'
miRNA:   3'- cCGGUGGgGGuCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 97027 0.72 0.322707
Target:  5'- cGGgCGCgCCCGGCCGCCcacauccacagggcGGggGGCGGc -3'
miRNA:   3'- -CCgGUGgGGGUCGGCGG--------------CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 21793 0.72 0.324826
Target:  5'- gGGCCGCCg-CAGCCGCCGGccgGGCc- -3'
miRNA:   3'- -CCGGUGGggGUCGGCGGCCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 82445 0.72 0.324826
Target:  5'- cGGCCGgCCCCGcGCCGCC-GUUGcCGc -3'
miRNA:   3'- -CCGGUgGGGGU-CGGCGGcCAACuGCu -5'
23777 5' -62.2 NC_005261.1 + 104361 0.72 0.324826
Target:  5'- cGCCGCCCgcgagaaCAGCCGCCGGccgGAggcCGAg -3'
miRNA:   3'- cCGGUGGGg------GUCGGCGGCCaa-CU---GCU- -5'
23777 5' -62.2 NC_005261.1 + 107756 0.72 0.310896
Target:  5'- gGGCCACgCCCCAGCgcuCGCUGGcgcGCGGu -3'
miRNA:   3'- -CCGGUG-GGGGUCG---GCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 60239 0.72 0.310896
Target:  5'- gGGCCGCCUCC-GCCGCggCGGgagcGGCGGc -3'
miRNA:   3'- -CCGGUGGGGGuCGGCG--GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 21200 0.72 0.302088
Target:  5'- cGGCCGCggacgcuggCCCCGGCCGCgacggcgggcccguCGGcUGGCGGc -3'
miRNA:   3'- -CCGGUG---------GGGGUCGGCG--------------GCCaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 66222 0.72 0.290863
Target:  5'- cGCCGCCCagCAGCCGCUGcUUGAUGc -3'
miRNA:   3'- cCGGUGGGg-GUCGGCGGCcAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 59939 0.72 0.290863
Target:  5'- cGGCCAUCUCCAGCCGCagcgCGGcgcgcgUGAaCGGg -3'
miRNA:   3'- -CCGGUGGGGGUCGGCG----GCCa-----ACU-GCU- -5'
23777 5' -62.2 NC_005261.1 + 111650 0.72 0.283774
Target:  5'- cGCCGCCuCCCAGCCcucccgcGCCGcGgUGGCGGc -3'
miRNA:   3'- cCGGUGG-GGGUCGG-------CGGC-CaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 67776 0.72 0.2825
Target:  5'- cGCCGCCCCCGGCCGCCcccuccuccgccucGGcgccgcccagUGGCa- -3'
miRNA:   3'- cCGGUGGGGGUCGGCGG--------------CCa---------ACUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.