Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23777 | 5' | -62.2 | NC_005261.1 | + | 15259 | 0.69 | 0.452325 |
Target: 5'- gGGCCGCgaucgCCCCGgcggcGCCGCCGGggcgcGCGGu -3' miRNA: 3'- -CCGGUG-----GGGGU-----CGGCGGCCaac--UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 2603 | 0.69 | 0.461174 |
Target: 5'- aGCCGCCgUCggcggcggGGCCGCCGGgcGGCa- -3' miRNA: 3'- cCGGUGGgGG--------UCGGCGGCCaaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 116174 | 0.69 | 0.461174 |
Target: 5'- cGGCCGCguCCCCGacGCCGCUGGgc-GCGu -3' miRNA: 3'- -CCGGUG--GGGGU--CGGCGGCCaacUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 18137 | 0.69 | 0.470113 |
Target: 5'- aGCCGCaggCCCAGUCGCCGa-UGGCGu -3' miRNA: 3'- cCGGUGg--GGGUCGGCGGCcaACUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 99780 | 0.69 | 0.470113 |
Target: 5'- aGGCgGCCCgggucCCAGUCGCggcgCGGaUGGCGAa -3' miRNA: 3'- -CCGgUGGG-----GGUCGGCG----GCCaACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 102538 | 0.69 | 0.470113 |
Target: 5'- uGGCCGCcugcggCCCCAGgCGCCcGGcgGACa- -3' miRNA: 3'- -CCGGUG------GGGGUCgGCGG-CCaaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 94051 | 0.69 | 0.470113 |
Target: 5'- cGCC-CCCCCAGCggCGCCGGgagcaGAa -3' miRNA: 3'- cCGGuGGGGGUCG--GCGGCCaacugCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 102433 | 0.69 | 0.470113 |
Target: 5'- cGGCCGCCUCCucggcgcGCCGCcCGGccucGGCGc -3' miRNA: 3'- -CCGGUGGGGGu------CGGCG-GCCaa--CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 64705 | 0.69 | 0.452325 |
Target: 5'- gGGCCGCCgCCGcGCacggGCCGGUUGuGCa- -3' miRNA: 3'- -CCGGUGGgGGU-CGg---CGGCCAAC-UGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 61638 | 0.69 | 0.44357 |
Target: 5'- uGGCCGCCCgU--CCGCCGGcgGACuGAg -3' miRNA: 3'- -CCGGUGGGgGucGGCGGCCaaCUG-CU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 109754 | 0.69 | 0.42635 |
Target: 5'- uGCgGCUCCCGGCCGCCGcGUcgccgucucgGGCGu -3' miRNA: 3'- cCGgUGGGGGUCGGCGGC-CAa---------CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 127687 | 0.69 | 0.42635 |
Target: 5'- cGGCCGCugCCCCGGCggCGCCGGagGAg-- -3' miRNA: 3'- -CCGGUG--GGGGUCG--GCGGCCaaCUgcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 41140 | 0.69 | 0.42635 |
Target: 5'- uGGCgCGCg-CCAGCCGCCGGUaGGCu- -3' miRNA: 3'- -CCG-GUGggGGUCGGCGGCCAaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 118884 | 0.69 | 0.42635 |
Target: 5'- cGGCCACCgCgGGCgCGCUGGU-GGCc- -3' miRNA: 3'- -CCGGUGGgGgUCG-GCGGCCAaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 134347 | 0.69 | 0.42635 |
Target: 5'- cGCaaGCCCCCGcgccGCCGCgCGGggGGCGGc -3' miRNA: 3'- cCGg-UGGGGGU----CGGCG-GCCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 109312 | 0.69 | 0.432332 |
Target: 5'- aGCCGCCCUggccuccgcgagcgCGGCCGCgGGgucGGCGGc -3' miRNA: 3'- cCGGUGGGG--------------GUCGGCGgCCaa-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 77717 | 0.69 | 0.43405 |
Target: 5'- cGCCGCCCcCCAGCCaagcggcGCCGGU--ACa- -3' miRNA: 3'- cCGGUGGG-GGUCGG-------CGGCCAacUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 85032 | 0.69 | 0.43405 |
Target: 5'- cGCCGCgCCCCGGCCacgaucgccgugaGCCcGUUGAUGu -3' miRNA: 3'- cCGGUG-GGGGUCGG-------------CGGcCAACUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 122311 | 0.69 | 0.434911 |
Target: 5'- aGGCgACgCCCgGGCCGgCGGUcaggUGGCGc -3' miRNA: 3'- -CCGgUG-GGGgUCGGCgGCCA----ACUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 4953 | 0.68 | 0.47914 |
Target: 5'- cGGCCcaggcGCCCCCGGCCGCgGcGUccucUGGgGc -3' miRNA: 3'- -CCGG-----UGGGGGUCGGCGgC-CA----ACUgCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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