miRNA display CGI


Results 61 - 80 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 78132 0.7 0.382711
Target:  5'- cGCCACCCCCGccgccccggcgcccGCCGCUGcc-GGCGGg -3'
miRNA:   3'- cCGGUGGGGGU--------------CGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 2250 0.7 0.382711
Target:  5'- cGGCCACUCa-GGCCGCCGGcgcucguccucgccgGGCGGc -3'
miRNA:   3'- -CCGGUGGGggUCGGCGGCCaa-------------CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 78850 0.7 0.385101
Target:  5'- cGGCgGCgCCC-GCCGCCGGagcGCGAg -3'
miRNA:   3'- -CCGgUGgGGGuCGGCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 127293 0.7 0.385101
Target:  5'- gGGCaGCCCUCc-CCGCCGGcUGGCGGu -3'
miRNA:   3'- -CCGgUGGGGGucGGCGGCCaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 107095 0.7 0.385101
Target:  5'- uGGCagucgaacagCGCCCCCAGCCgcgccaccgcGCCGGc-GACGGc -3'
miRNA:   3'- -CCG----------GUGGGGGUCGG----------CGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 83188 0.7 0.385101
Target:  5'- uGCgCACCCgCAGCUGCCGcgUGACGu -3'
miRNA:   3'- cCG-GUGGGgGUCGGCGGCcaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 38407 0.7 0.385101
Target:  5'- aGCCACCCCUcGCCGCUGucgcgGGCGc -3'
miRNA:   3'- cCGGUGGGGGuCGGCGGCcaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 43418 0.7 0.393138
Target:  5'- gGGCgGCCUCC-GCCGCCGGc-GGgGAg -3'
miRNA:   3'- -CCGgUGGGGGuCGGCGGCCaaCUgCU- -5'
23777 5' -62.2 NC_005261.1 + 70819 0.7 0.393138
Target:  5'- cGGCgGCCCCgGGCgCGCCGGcgcGCGc -3'
miRNA:   3'- -CCGgUGGGGgUCG-GCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 88143 0.7 0.401283
Target:  5'- cGCCGCgcgggggcgCCCCGGCCgcgcaGCCGGgccggGGCGAc -3'
miRNA:   3'- cCGGUG---------GGGGUCGG-----CGGCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 44033 0.7 0.401283
Target:  5'- cGGCCGCCgCgCGGCgGCCGcg-GGCGGg -3'
miRNA:   3'- -CCGGUGGgG-GUCGgCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 42273 0.7 0.401283
Target:  5'- cGGCCGCgCCCagCAGCCGCCGcgaGAUGu -3'
miRNA:   3'- -CCGGUG-GGG--GUCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 35043 0.7 0.401283
Target:  5'- cGCCGCCCUaacggCGGCCGCgCGGc-GGCGGu -3'
miRNA:   3'- cCGGUGGGG-----GUCGGCG-GCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 58766 0.7 0.409534
Target:  5'- cGCCgagagcGCCCCCAGCgCGCCGGccaGCGc -3'
miRNA:   3'- cCGG------UGGGGGUCG-GCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 55265 0.7 0.409534
Target:  5'- aGGUCugcGCCCCCuGGCgCGCCGGa-GGCGGg -3'
miRNA:   3'- -CCGG---UGGGGG-UCG-GCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 134665 0.7 0.409534
Target:  5'- aGCCGCgaaCCaCCAGCCGCCaGGacccGACGAc -3'
miRNA:   3'- cCGGUG---GG-GGUCGGCGG-CCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 126070 0.7 0.409534
Target:  5'- aGCCGCCCgCCGGCC-UCGGcgGGCGc -3'
miRNA:   3'- cCGGUGGG-GGUCGGcGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 27278 0.7 0.417891
Target:  5'- cGGCCgGCCCCCGGaCCGCCcuc--GCGAg -3'
miRNA:   3'- -CCGG-UGGGGGUC-GGCGGccaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 38628 0.7 0.417891
Target:  5'- cGGCCGagCCC-GCCGCCGacggUGACGGu -3'
miRNA:   3'- -CCGGUggGGGuCGGCGGCca--ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 127687 0.69 0.42635
Target:  5'- cGGCCGCugCCCCGGCggCGCCGGagGAg-- -3'
miRNA:   3'- -CCGGUG--GGGGUCG--GCGGCCaaCUgcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.