miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 118884 0.69 0.42635
Target:  5'- cGGCCACCgCgGGCgCGCUGGU-GGCc- -3'
miRNA:   3'- -CCGGUGGgGgUCG-GCGGCCAaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 41140 0.69 0.42635
Target:  5'- uGGCgCGCg-CCAGCCGCCGGUaGGCu- -3'
miRNA:   3'- -CCG-GUGggGGUCGGCGGCCAaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 127687 0.69 0.42635
Target:  5'- cGGCCGCugCCCCGGCggCGCCGGagGAg-- -3'
miRNA:   3'- -CCGGUG--GGGGUCG--GCGGCCaaCUgcu -5'
23777 5' -62.2 NC_005261.1 + 109754 0.69 0.42635
Target:  5'- uGCgGCUCCCGGCCGCCGcGUcgccgucucgGGCGu -3'
miRNA:   3'- cCGgUGGGGGUCGGCGGC-CAa---------CUGCu -5'
23777 5' -62.2 NC_005261.1 + 109312 0.69 0.432332
Target:  5'- aGCCGCCCUggccuccgcgagcgCGGCCGCgGGgucGGCGGc -3'
miRNA:   3'- cCGGUGGGG--------------GUCGGCGgCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 77717 0.69 0.43405
Target:  5'- cGCCGCCCcCCAGCCaagcggcGCCGGU--ACa- -3'
miRNA:   3'- cCGGUGGG-GGUCGG-------CGGCCAacUGcu -5'
23777 5' -62.2 NC_005261.1 + 85032 0.69 0.43405
Target:  5'- cGCCGCgCCCCGGCCacgaucgccgugaGCCcGUUGAUGu -3'
miRNA:   3'- cCGGUG-GGGGUCGG-------------CGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 122311 0.69 0.434911
Target:  5'- aGGCgACgCCCgGGCCGgCGGUcaggUGGCGc -3'
miRNA:   3'- -CCGgUG-GGGgUCGGCgGCCA----ACUGCu -5'
23777 5' -62.2 NC_005261.1 + 61638 0.69 0.44357
Target:  5'- uGGCCGCCCgU--CCGCCGGcgGACuGAg -3'
miRNA:   3'- -CCGGUGGGgGucGGCGGCCaaCUG-CU- -5'
23777 5' -62.2 NC_005261.1 + 64705 0.69 0.452325
Target:  5'- gGGCCGCCgCCGcGCacggGCCGGUUGuGCa- -3'
miRNA:   3'- -CCGGUGGgGGU-CGg---CGGCCAAC-UGcu -5'
23777 5' -62.2 NC_005261.1 + 96470 0.69 0.452325
Target:  5'- aGGCCGCgCUCC-GCgGCUGGgggUGAUGGg -3'
miRNA:   3'- -CCGGUG-GGGGuCGgCGGCCa--ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 15259 0.69 0.452325
Target:  5'- gGGCCGCgaucgCCCCGgcggcGCCGCCGGggcgcGCGGu -3'
miRNA:   3'- -CCGGUG-----GGGGU-----CGGCGGCCaac--UGCU- -5'
23777 5' -62.2 NC_005261.1 + 2603 0.69 0.461174
Target:  5'- aGCCGCCgUCggcggcggGGCCGCCGGgcGGCa- -3'
miRNA:   3'- cCGGUGGgGG--------UCGGCGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 116174 0.69 0.461174
Target:  5'- cGGCCGCguCCCCGacGCCGCUGGgc-GCGu -3'
miRNA:   3'- -CCGGUG--GGGGU--CGGCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 102433 0.69 0.470113
Target:  5'- cGGCCGCCUCCucggcgcGCCGCcCGGccucGGCGc -3'
miRNA:   3'- -CCGGUGGGGGu------CGGCG-GCCaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 94051 0.69 0.470113
Target:  5'- cGCC-CCCCCAGCggCGCCGGgagcaGAa -3'
miRNA:   3'- cCGGuGGGGGUCG--GCGGCCaacugCU- -5'
23777 5' -62.2 NC_005261.1 + 102538 0.69 0.470113
Target:  5'- uGGCCGCcugcggCCCCAGgCGCCcGGcgGACa- -3'
miRNA:   3'- -CCGGUG------GGGGUCgGCGG-CCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 99780 0.69 0.470113
Target:  5'- aGGCgGCCCgggucCCAGUCGCggcgCGGaUGGCGAa -3'
miRNA:   3'- -CCGgUGGG-----GGUCGGCG----GCCaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 18137 0.69 0.470113
Target:  5'- aGCCGCaggCCCAGUCGCCGa-UGGCGu -3'
miRNA:   3'- cCGGUGg--GGGUCGGCGGCcaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 4953 0.68 0.47914
Target:  5'- cGGCCcaggcGCCCCCGGCCGCgGcGUccucUGGgGc -3'
miRNA:   3'- -CCGG-----UGGGGGUCGGCGgC-CA----ACUgCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.