Results 101 - 120 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23777 | 5' | -62.2 | NC_005261.1 | + | 105466 | 0.68 | 0.47914 |
Target: 5'- cGGCCGCCCUCAGCUcCuCGGggcgcGCGGg -3' miRNA: 3'- -CCGGUGGGGGUCGGcG-GCCaac--UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 76214 | 0.68 | 0.47914 |
Target: 5'- aGCCGCgCCUGcGCCGCgCGcUUGACGAg -3' miRNA: 3'- cCGGUGgGGGU-CGGCG-GCcAACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 48648 | 0.68 | 0.47914 |
Target: 5'- cGCCgGCCCCCgcccggagAGCCGCgCGGcaacGGCGAc -3' miRNA: 3'- cCGG-UGGGGG--------UCGGCG-GCCaa--CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 30556 | 0.68 | 0.47914 |
Target: 5'- aGGCCGCC----GCCGCCGGggccucgGACGGg -3' miRNA: 3'- -CCGGUGGggguCGGCGGCCaa-----CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 4953 | 0.68 | 0.47914 |
Target: 5'- cGGCCcaggcGCCCCCGGCCGCgGcGUccucUGGgGc -3' miRNA: 3'- -CCGG-----UGGGGGUCGGCGgC-CA----ACUgCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 4881 | 0.68 | 0.47914 |
Target: 5'- cGGCCGCCUCagccgCGGCCGCCucGGcUUcGGCGGc -3' miRNA: 3'- -CCGGUGGGG-----GUCGGCGG--CC-AA-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 44254 | 0.68 | 0.488251 |
Target: 5'- cGGCCgACgCCgCGGCgCGCgGGggGGCGGg -3' miRNA: 3'- -CCGG-UGgGG-GUCG-GCGgCCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 33347 | 0.68 | 0.488251 |
Target: 5'- cGCCACCgCCGccaccGCCGCCGGgccGCGc -3' miRNA: 3'- cCGGUGGgGGU-----CGGCGGCCaacUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 109901 | 0.68 | 0.488251 |
Target: 5'- gGGCUacaGCCCCUGGaCCGCCGGgaugcUGcACGu -3' miRNA: 3'- -CCGG---UGGGGGUC-GGCGGCCa----AC-UGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 6332 | 0.68 | 0.497442 |
Target: 5'- uGGCCgcguACCCCCuGCCcaccggccucgcGCCGGUccGGCGc -3' miRNA: 3'- -CCGG----UGGGGGuCGG------------CGGCCAa-CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 46159 | 0.68 | 0.497442 |
Target: 5'- cGGCacuGCgCCCCAGUCGCCGaugGGCGc -3' miRNA: 3'- -CCGg--UG-GGGGUCGGCGGCcaaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 78033 | 0.68 | 0.497442 |
Target: 5'- cGCCGCuccgCCCCAGCCGgUGGUc-GCGGg -3' miRNA: 3'- cCGGUG----GGGGUCGGCgGCCAacUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 98159 | 0.68 | 0.503922 |
Target: 5'- aGGCCGCgggcggcgggugugUCCUuggAGCCGCCGGggGcGCGGc -3' miRNA: 3'- -CCGGUG--------------GGGG---UCGGCGGCCaaC-UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 132078 | 0.68 | 0.50671 |
Target: 5'- cGGCCGCCgUCGccGCUGCCGcGgagGGCGGc -3' miRNA: 3'- -CCGGUGGgGGU--CGGCGGC-Caa-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 87794 | 0.68 | 0.50671 |
Target: 5'- uGGCCGCCgcgUCCauGGCCGgCGGggcuggGACGGg -3' miRNA: 3'- -CCGGUGG---GGG--UCGGCgGCCaa----CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 52445 | 0.68 | 0.50671 |
Target: 5'- gGGCCACgagguCCCCGGCgCGCgucaggaugCGGUUGcgGCGGc -3' miRNA: 3'- -CCGGUG-----GGGGUCG-GCG---------GCCAAC--UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 1578 | 0.68 | 0.50671 |
Target: 5'- cGCCgaGCCCCCAGCgGuuGGcgGcGCGGu -3' miRNA: 3'- cCGG--UGGGGGUCGgCggCCaaC-UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 106573 | 0.68 | 0.516052 |
Target: 5'- cGCCGgCCCCggGGCCGCCGcgcGGCGc -3' miRNA: 3'- cCGGUgGGGG--UCGGCGGCcaaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 132039 | 0.68 | 0.516052 |
Target: 5'- uGGCCGCCCUgGaCC-CCGGggaggUGGCGGc -3' miRNA: 3'- -CCGGUGGGGgUcGGcGGCCa----ACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 67950 | 0.68 | 0.516052 |
Target: 5'- cGGcCCGCUCgCgCGGCCGCCGcGgcGAUGGa -3' miRNA: 3'- -CC-GGUGGG-G-GUCGGCGGC-CaaCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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