miRNA display CGI


Results 61 - 80 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 104693 0.67 0.592848
Target:  5'- gGGCCACCgCCCcgaagAGCgGCUGGacgGcCGAg -3'
miRNA:   3'- -CCGGUGG-GGG-----UCGgCGGCCaa-CuGCU- -5'
23777 5' -62.2 NC_005261.1 + 83847 0.67 0.592848
Target:  5'- gGGCCGCggCCCCgcugGGCUggGCCGGgccgGACGc -3'
miRNA:   3'- -CCGGUG--GGGG----UCGG--CGGCCaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 52701 0.67 0.592848
Target:  5'- cGCCGCUgCCGGCCGauGaaagUGACGAg -3'
miRNA:   3'- cCGGUGGgGGUCGGCggCca--ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 98334 0.67 0.592848
Target:  5'- cGGCgCGCCCCguGUCGaCGcGggGGCGGg -3'
miRNA:   3'- -CCG-GUGGGGguCGGCgGC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 32394 0.67 0.583096
Target:  5'- cGGCgGCgUCCCGgagcgcgugccGCCGCCGGc-GACGGg -3'
miRNA:   3'- -CCGgUG-GGGGU-----------CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 35963 0.67 0.583096
Target:  5'- cGGCCagGCCgCUCGGCCGCUGuagcGGCGGc -3'
miRNA:   3'- -CCGG--UGG-GGGUCGGCGGCcaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 136532 0.67 0.583096
Target:  5'- aGGUCcaggauggaGCCCUCGGCCaGCUGGUgggGGCa- -3'
miRNA:   3'- -CCGG---------UGGGGGUCGG-CGGCCAa--CUGcu -5'
23777 5' -62.2 NC_005261.1 + 33733 0.67 0.583096
Target:  5'- gGGCCugCCCCucgcgcGgCGCCGGggccgGGCc- -3'
miRNA:   3'- -CCGGugGGGGu-----CgGCGGCCaa---CUGcu -5'
23777 5' -62.2 NC_005261.1 + 47609 0.67 0.581149
Target:  5'- aGCCGCCCCCugcgggggcggccgcGGCCGCCGcGcgcaccgcguccuccUcGACGGc -3'
miRNA:   3'- cCGGUGGGGG---------------UCGGCGGC-C---------------AaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68663 0.67 0.573376
Target:  5'- cGCCGCCCgC-GCCGCCGGcguccgccgcGugGGg -3'
miRNA:   3'- cCGGUGGGgGuCGGCGGCCaa--------CugCU- -5'
23777 5' -62.2 NC_005261.1 + 23876 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 23819 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 23762 0.67 0.573376
Target:  5'- gGGCUugCCCCGGgCggGCCGGcuaggGugGGc -3'
miRNA:   3'- -CCGGugGGGGUCgG--CGGCCaa---CugCU- -5'
23777 5' -62.2 NC_005261.1 + 22816 0.67 0.573376
Target:  5'- cGGCgCugCCgCC-GCCGCC-GUUGGCGc -3'
miRNA:   3'- -CCG-GugGG-GGuCGGCGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 129708 0.67 0.573376
Target:  5'- gGGCCggaggcagGCCCgCCGGCUGCagcggcaGGgcGGCGGg -3'
miRNA:   3'- -CCGG--------UGGG-GGUCGGCGg------CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 8384 0.67 0.573376
Target:  5'- gGGCC-CCCCCaAGCCgggGCUGGgauuCGAa -3'
miRNA:   3'- -CCGGuGGGGG-UCGG---CGGCCaacuGCU- -5'
23777 5' -62.2 NC_005261.1 + 86834 0.67 0.572406
Target:  5'- cGGCCGCCaucaccgaggCCAgccggcgcucaacGCCGCCGGgcgcGGCGGc -3'
miRNA:   3'- -CCGGUGGg---------GGU-------------CGGCGGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 124441 0.67 0.571436
Target:  5'- cGCCGCCacaCCAGCCgggGCCGGgugcccucaggGGCGc -3'
miRNA:   3'- cCGGUGGg--GGUCGG---CGGCCaa---------CUGCu -5'
23777 5' -62.2 NC_005261.1 + 117575 0.67 0.567562
Target:  5'- uGCCGCCCCgCGcCCGCCGcuGUcgauccugccgacgaUGACGAc -3'
miRNA:   3'- cCGGUGGGG-GUcGGCGGC--CA---------------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 15753 0.67 0.567562
Target:  5'- aGGCCgACCgCCUcgccgcgauacacaaGGCCGCUGGcgGGCGc -3'
miRNA:   3'- -CCGG-UGG-GGG---------------UCGGCGGCCaaCUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.