Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23777 | 5' | -62.2 | NC_005261.1 | + | 66019 | 0.67 | 0.563695 |
Target: 5'- cGCCACCgCCGGCgCGUCGuaGUcGGCGGc -3' miRNA: 3'- cCGGUGGgGGUCG-GCGGC--CAaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 2705 | 0.67 | 0.563695 |
Target: 5'- uGGCCggcgccggGCCCCUGGCC-CCGGccGACu- -3' miRNA: 3'- -CCGG--------UGGGGGUCGGcGGCCaaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 1290 | 0.67 | 0.563695 |
Target: 5'- aGGCCggcgggGCUCCC-GUCGCCGGc-GGCGGc -3' miRNA: 3'- -CCGG------UGGGGGuCGGCGGCCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 94308 | 0.67 | 0.563695 |
Target: 5'- cGGCgACCCaggggggcgCCAGCCcgaacucgcGCCGGUaGGCGu -3' miRNA: 3'- -CCGgUGGG---------GGUCGG---------CGGCCAaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 113370 | 0.67 | 0.563695 |
Target: 5'- cGUCGCCCUCAuGCCGaCCGuGUccucgucgcaggUGACGGa -3' miRNA: 3'- cCGGUGGGGGU-CGGC-GGC-CA------------ACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 47402 | 0.67 | 0.563695 |
Target: 5'- cGCCGCCCCCcgugcacacgcGGUacucCCGGUgGGCGAa -3' miRNA: 3'- cCGGUGGGGG-----------UCGgc--GGCCAaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 74015 | 0.67 | 0.563695 |
Target: 5'- cGGCCaacaugaacacGCCCagcaagauggaCCAGCgCGCCGGggGGCu- -3' miRNA: 3'- -CCGG-----------UGGG-----------GGUCG-GCGGCCaaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 97772 | 0.67 | 0.562729 |
Target: 5'- cGGCCggcaucgACUCCCgAGCC-CCGGgccGGCGAc -3' miRNA: 3'- -CCGG-------UGGGGG-UCGGcGGCCaa-CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 58275 | 0.67 | 0.562729 |
Target: 5'- cGCCGCgCUcacggggCCGGCgCGCCGGggGGCGc -3' miRNA: 3'- cCGGUG-GG-------GGUCG-GCGGCCaaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 109565 | 0.67 | 0.554057 |
Target: 5'- cGGCC-CCCCUcGCCGCUGcc-GACGc -3' miRNA: 3'- -CCGGuGGGGGuCGGCGGCcaaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 135353 | 0.67 | 0.554057 |
Target: 5'- cGGuUCGCCCCCgagGGCCGCCgcgucaccuGGgaGACGc -3' miRNA: 3'- -CC-GGUGGGGG---UCGGCGG---------CCaaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 117673 | 0.67 | 0.554057 |
Target: 5'- cGCCGCgCCCGGCCGggcCCGc--GGCGAg -3' miRNA: 3'- cCGGUGgGGGUCGGC---GGCcaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 31108 | 0.67 | 0.554057 |
Target: 5'- cGGCgGCCCC--GCCGCCGac-GGCGGc -3' miRNA: 3'- -CCGgUGGGGguCGGCGGCcaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 121417 | 0.67 | 0.554057 |
Target: 5'- cGGCUGCCgCC-GCCGCUacgGGgcGGCGGg -3' miRNA: 3'- -CCGGUGGgGGuCGGCGG---CCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 87952 | 0.67 | 0.544469 |
Target: 5'- cGCCGCCa-CGGcCCGCCGGc-GGCGGg -3' miRNA: 3'- cCGGUGGggGUC-GGCGGCCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 14995 | 0.67 | 0.544469 |
Target: 5'- cGGCCGCgCCCGGagCGCgGGagGAgGAg -3' miRNA: 3'- -CCGGUGgGGGUCg-GCGgCCaaCUgCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 83117 | 0.68 | 0.534936 |
Target: 5'- cGCCGCCgCCAGCCGCgCGcgcGGCa- -3' miRNA: 3'- cCGGUGGgGGUCGGCG-GCcaaCUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 27481 | 0.68 | 0.534936 |
Target: 5'- aGGCCcUCCCCGGgcgcaccuggaCCGCCaGGUcugGGCGGg -3' miRNA: 3'- -CCGGuGGGGGUC-----------GGCGG-CCAa--CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 123623 | 0.68 | 0.534936 |
Target: 5'- aGGCUGCCCaUCAGCCGCUGc---GCGAu -3' miRNA: 3'- -CCGGUGGG-GGUCGGCGGCcaacUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 91494 | 0.68 | 0.534936 |
Target: 5'- cGGCCGCCgCCCGccccgcgcGCCuGCUGGUcucgGACa- -3' miRNA: 3'- -CCGGUGG-GGGU--------CGG-CGGCCAa---CUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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