miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 34270 0.66 0.602626
Target:  5'- gGGCCcguagACCUCaCGGCgGCCGGcgggGACGc -3'
miRNA:   3'- -CCGG-----UGGGG-GUCGgCGGCCaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 34730 0.66 0.641876
Target:  5'- cGG-CGCCCCCuGGCgGCCGcGggGugGu -3'
miRNA:   3'- -CCgGUGGGGG-UCGgCGGC-CaaCugCu -5'
23777 5' -62.2 NC_005261.1 + 35043 0.7 0.401283
Target:  5'- cGCCGCCCUaacggCGGCCGCgCGGc-GGCGGu -3'
miRNA:   3'- cCGGUGGGG-----GUCGGCG-GCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 35109 0.78 0.123193
Target:  5'- cGGCgAgcCCCCCAGCCGCCGGc-GGCGu -3'
miRNA:   3'- -CCGgU--GGGGGUCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 35678 0.71 0.357082
Target:  5'- cGGCCGCaCCCCcGCCggcgagccccgguggGCCGGgggcucggUGGCGGc -3'
miRNA:   3'- -CCGGUG-GGGGuCGG---------------CGGCCa-------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 35737 0.66 0.651688
Target:  5'- aGGCCACCUgggccgaagCCAGCCGCgaaggCGGcucgGGcCGAg -3'
miRNA:   3'- -CCGGUGGG---------GGUCGGCG-----GCCaa--CU-GCU- -5'
23777 5' -62.2 NC_005261.1 + 35963 0.67 0.583096
Target:  5'- cGGCCagGCCgCUCGGCCGCUGuagcGGCGGc -3'
miRNA:   3'- -CCGG--UGG-GGGUCGGCGGCcaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 38407 0.7 0.385101
Target:  5'- aGCCACCCCUcGCCGCUGucgcgGGCGc -3'
miRNA:   3'- cCGGUGGGGGuCGGCGGCcaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 38628 0.7 0.417891
Target:  5'- cGGCCGagCCC-GCCGCCGacggUGACGGu -3'
miRNA:   3'- -CCGGUggGGGuCGGCGGCca--ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 39365 0.71 0.331962
Target:  5'- aGCCGCCUcaUCGGCgGCCGGggagGGCGGc -3'
miRNA:   3'- cCGGUGGG--GGUCGgCGGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 39760 0.66 0.651688
Target:  5'- cGGCCuccugcaggaugGCCUCgAggacGUCGCCGGggGGCGGc -3'
miRNA:   3'- -CCGG------------UGGGGgU----CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 41140 0.69 0.42635
Target:  5'- uGGCgCGCg-CCAGCCGCCGGUaGGCu- -3'
miRNA:   3'- -CCG-GUGggGGUCGGCGGCCAaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 41529 0.76 0.173903
Target:  5'- -uCCACCCCCAGCCccgGCUGGcccgUGGCGGu -3'
miRNA:   3'- ccGGUGGGGGUCGG---CGGCCa---ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 42273 0.7 0.401283
Target:  5'- cGGCCGCgCCCagCAGCCGCCGcgaGAUGu -3'
miRNA:   3'- -CCGGUG-GGG--GUCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 42700 0.77 0.150212
Target:  5'- cGCgGCCgCCAGCUGCCGGauccgcUUGACGAu -3'
miRNA:   3'- cCGgUGGgGGUCGGCGGCC------AACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 43418 0.7 0.393138
Target:  5'- gGGCgGCCUCC-GCCGCCGGc-GGgGAg -3'
miRNA:   3'- -CCGgUGGGGGuCGGCGGCCaaCUgCU- -5'
23777 5' -62.2 NC_005261.1 + 43818 0.66 0.632057
Target:  5'- gGGCgCGCCCUCcguggagaAGCUGCuCGGcgagGGCGAg -3'
miRNA:   3'- -CCG-GUGGGGG--------UCGGCG-GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 44033 0.7 0.401283
Target:  5'- cGGCCGCCgCgCGGCgGCCGcg-GGCGGg -3'
miRNA:   3'- -CCGGUGGgG-GUCGgCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 44254 0.68 0.488251
Target:  5'- cGGCCgACgCCgCGGCgCGCgGGggGGCGGg -3'
miRNA:   3'- -CCGG-UGgGG-GUCG-GCGgCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 44307 0.66 0.641876
Target:  5'- gGGCCgcuGCCCgCGGgCGCCGca-GACGGg -3'
miRNA:   3'- -CCGG---UGGGgGUCgGCGGCcaaCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.