miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 46159 0.68 0.497442
Target:  5'- cGGCacuGCgCCCCAGUCGCCGaugGGCGc -3'
miRNA:   3'- -CCGg--UG-GGGGUCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 46392 0.66 0.641876
Target:  5'- cGCCGgCCCC-GUCGCCGacggUGGCGu -3'
miRNA:   3'- cCGGUgGGGGuCGGCGGCca--ACUGCu -5'
23777 5' -62.2 NC_005261.1 + 47402 0.67 0.563695
Target:  5'- cGCCGCCCCCcgugcacacgcGGUacucCCGGUgGGCGAa -3'
miRNA:   3'- cCGGUGGGGG-----------UCGgc--GGCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 47609 0.67 0.581149
Target:  5'- aGCCGCCCCCugcgggggcggccgcGGCCGCCGcGcgcaccgcguccuccUcGACGGc -3'
miRNA:   3'- cCGGUGGGGG---------------UCGGCGGC-C---------------AaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 47690 0.73 0.259744
Target:  5'- cGGCCGCCCgCGG-CGCCGcGUcGGCGGc -3'
miRNA:   3'- -CCGGUGGGgGUCgGCGGC-CAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 48648 0.68 0.47914
Target:  5'- cGCCgGCCCCCgcccggagAGCCGCgCGGcaacGGCGAc -3'
miRNA:   3'- cCGG-UGGGGG--------UCGGCG-GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 49189 0.66 0.632057
Target:  5'- cGGCCagGCCCUCGGCCGacagCGag-GGCGGg -3'
miRNA:   3'- -CCGG--UGGGGGUCGGCg---GCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 50011 0.73 0.248078
Target:  5'- cGCCGCCagcgcgcgggcgCCCAGCCGCCGcgcGACGGu -3'
miRNA:   3'- cCGGUGG------------GGGUCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 50793 0.8 0.088733
Target:  5'- cGGCCGCCCCgGcGCCGCCGccaUGACGGg -3'
miRNA:   3'- -CCGGUGGGGgU-CGGCGGCca-ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 52445 0.68 0.50671
Target:  5'- gGGCCACgagguCCCCGGCgCGCgucaggaugCGGUUGcgGCGGc -3'
miRNA:   3'- -CCGGUG-----GGGGUCG-GCG---------GCCAAC--UGCU- -5'
23777 5' -62.2 NC_005261.1 + 52701 0.67 0.592848
Target:  5'- cGCCGCUgCCGGCCGauGaaagUGACGAg -3'
miRNA:   3'- cCGGUGGgGGUCGGCggCca--ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 53367 0.68 0.525462
Target:  5'- cGGCCGCcgCCCCGGCCG-CGGUg----- -3'
miRNA:   3'- -CCGGUG--GGGGUCGGCgGCCAacugcu -5'
23777 5' -62.2 NC_005261.1 + 55035 0.68 0.525462
Target:  5'- cGCCgGCCCCgcgCAGCUGCgCGGggccGGCGAg -3'
miRNA:   3'- cCGG-UGGGG---GUCGGCG-GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 55166 0.66 0.622238
Target:  5'- cGCCGCCgCCGGCgGCuCGcggGGCGGa -3'
miRNA:   3'- cCGGUGGgGGUCGgCG-GCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 55265 0.7 0.409534
Target:  5'- aGGUCugcGCCCCCuGGCgCGCCGGa-GGCGGg -3'
miRNA:   3'- -CCGG---UGGGGG-UCG-GCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 58275 0.67 0.562729
Target:  5'- cGCCGCgCUcacggggCCGGCgCGCCGGggGGCGc -3'
miRNA:   3'- cCGGUG-GG-------GGUCG-GCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 58766 0.7 0.409534
Target:  5'- cGCCgagagcGCCCCCAGCgCGCCGGccaGCGc -3'
miRNA:   3'- cCGG------UGGGGGUCG-GCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 59939 0.72 0.290863
Target:  5'- cGGCCAUCUCCAGCCGCagcgCGGcgcgcgUGAaCGGg -3'
miRNA:   3'- -CCGGUGGGGGUCGGCG----GCCa-----ACU-GCU- -5'
23777 5' -62.2 NC_005261.1 + 60239 0.72 0.310896
Target:  5'- gGGCCGCCUCC-GCCGCggCGGgagcGGCGGc -3'
miRNA:   3'- -CCGGUGGGGGuCGGCG--GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 60286 0.67 0.592848
Target:  5'- gGGuCCGCCCCCgcGGCCcgcaggcaGUCGGcugaGACGAu -3'
miRNA:   3'- -CC-GGUGGGGG--UCGG--------CGGCCaa--CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.