miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 61260 0.68 0.532087
Target:  5'- uGGCCGCCUCCGGggccgugcccaugcCCGCCGa--GACGc -3'
miRNA:   3'- -CCGGUGGGGGUC--------------GGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 61638 0.69 0.44357
Target:  5'- uGGCCGCCCgU--CCGCCGGcgGACuGAg -3'
miRNA:   3'- -CCGGUGGGgGucGGCGGCCaaCUG-CU- -5'
23777 5' -62.2 NC_005261.1 + 62670 0.66 0.612425
Target:  5'- aGGCCAgcgccacguCCgCCAGCugcacgCGCCGGcgcagcgUGGCGAg -3'
miRNA:   3'- -CCGGU---------GGgGGUCG------GCGGCCa------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 63012 0.68 0.47914
Target:  5'- cGGCCGCgCCCgcgcGGgCGCCGGcgcccgcGGCGAg -3'
miRNA:   3'- -CCGGUGgGGG----UCgGCGGCCaa-----CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 64705 0.69 0.452325
Target:  5'- gGGCCGCCgCCGcGCacggGCCGGUUGuGCa- -3'
miRNA:   3'- -CCGGUGGgGGU-CGg---CGGCCAAC-UGcu -5'
23777 5' -62.2 NC_005261.1 + 66019 0.67 0.563695
Target:  5'- cGCCACCgCCGGCgCGUCGuaGUcGGCGGc -3'
miRNA:   3'- cCGGUGGgGGUCG-GCGGC--CAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 66222 0.72 0.290863
Target:  5'- cGCCGCCCagCAGCCGCUGcUUGAUGc -3'
miRNA:   3'- cCGGUGGGg-GUCGGCGGCcAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 66705 0.79 0.114277
Target:  5'- aGGCCGCgCUCAGCgagCGCCGGUUGAUGc -3'
miRNA:   3'- -CCGGUGgGGGUCG---GCGGCCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 67311 0.66 0.632057
Target:  5'- cGCCGCCgUCGGCCGCCGcc--GCGc -3'
miRNA:   3'- cCGGUGGgGGUCGGCGGCcaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 67491 0.71 0.369357
Target:  5'- cGGCCGCCgCCAGCCGCgCGuaGUaGGCc- -3'
miRNA:   3'- -CCGGUGGgGGUCGGCG-GC--CAaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 67776 0.72 0.2825
Target:  5'- cGCCGCCCCCGGCCGCCcccuccuccgccucGGcgccgcccagUGGCa- -3'
miRNA:   3'- cCGGUGGGGGUCGGCGG--------------CCa---------ACUGcu -5'
23777 5' -62.2 NC_005261.1 + 67950 0.68 0.516052
Target:  5'- cGGcCCGCUCgCgCGGCCGCCGcGgcGAUGGa -3'
miRNA:   3'- -CC-GGUGGG-G-GUCGGCGGC-CaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68192 0.73 0.265743
Target:  5'- gGGCCcccucGCCCCC-GCCGCCGGc--GCGGc -3'
miRNA:   3'- -CCGG-----UGGGGGuCGGCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68318 0.66 0.612425
Target:  5'- cGGCCGCUUCgAcgUGCCGGUcGGCGAc -3'
miRNA:   3'- -CCGGUGGGGgUcgGCGGCCAaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 68663 0.67 0.573376
Target:  5'- cGCCGCCCgC-GCCGCCGGcguccgccgcGugGGg -3'
miRNA:   3'- cCGGUGGGgGuCGGCGGCCaa--------CugCU- -5'
23777 5' -62.2 NC_005261.1 + 68977 0.66 0.648746
Target:  5'- cGCCACCgcggCCCuuuucgGGCCGCgCGGgcgccgcggcuucgUUGGCGAg -3'
miRNA:   3'- cCGGUGG----GGG------UCGGCG-GCC--------------AACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 69288 0.71 0.361651
Target:  5'- cGCCGaCCCCGGCgcggggCGCCGGUggcGGCGGg -3'
miRNA:   3'- cCGGUgGGGGUCG------GCGGCCAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 70368 0.7 0.377173
Target:  5'- cGGCgCGCCUCCAcggcGCCGCUGGccGACa- -3'
miRNA:   3'- -CCG-GUGGGGGU----CGGCGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 70819 0.7 0.393138
Target:  5'- cGGCgGCCCCgGGCgCGCCGGcgcGCGc -3'
miRNA:   3'- -CCGgUGGGGgUCG-GCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 71002 0.66 0.632057
Target:  5'- cGGCCGCCaggCCAGCuCGCCGcGcaggaaGGCGu -3'
miRNA:   3'- -CCGGUGGg--GGUCG-GCGGC-Caa----CUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.