miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 108310 0.68 0.525462
Target:  5'- cGGCguCCCagaCGGCCGCCGcGUgcuccGCGAc -3'
miRNA:   3'- -CCGguGGGg--GUCGGCGGC-CAac---UGCU- -5'
23777 5' -62.2 NC_005261.1 + 107756 0.72 0.310896
Target:  5'- gGGCCACgCCCCAGCgcuCGCUGGcgcGCGGu -3'
miRNA:   3'- -CCGGUG-GGGGUCG---GCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 107400 0.66 0.612425
Target:  5'- cGGCCAgagCCCGGCCGCCaGGgc--CGAg -3'
miRNA:   3'- -CCGGUgg-GGGUCGGCGG-CCaacuGCU- -5'
23777 5' -62.2 NC_005261.1 + 107095 0.7 0.385101
Target:  5'- uGGCagucgaacagCGCCCCCAGCCgcgccaccgcGCCGGc-GACGGc -3'
miRNA:   3'- -CCG----------GUGGGGGUCGG----------CGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 106573 0.68 0.516052
Target:  5'- cGCCGgCCCCggGGCCGCCGcgcGGCGc -3'
miRNA:   3'- cCGGUgGGGG--UCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 106350 0.73 0.253856
Target:  5'- cGuCCGCCCCC-GCCGCCGcGcUGACGc -3'
miRNA:   3'- cC-GGUGGGGGuCGGCGGC-CaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 106257 0.75 0.210634
Target:  5'- gGGCCGCCgCCGccgcuGCCGCCGGgcGGCc- -3'
miRNA:   3'- -CCGGUGGgGGU-----CGGCGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 105466 0.68 0.47914
Target:  5'- cGGCCGCCCUCAGCUcCuCGGggcgcGCGGg -3'
miRNA:   3'- -CCGGUGGGGGUCGGcG-GCCaac--UGCU- -5'
23777 5' -62.2 NC_005261.1 + 104693 0.67 0.592848
Target:  5'- gGGCCACCgCCCcgaagAGCgGCUGGacgGcCGAg -3'
miRNA:   3'- -CCGGUGG-GGG-----UCGgCGGCCaa-CuGCU- -5'
23777 5' -62.2 NC_005261.1 + 104361 0.72 0.324826
Target:  5'- cGCCGCCCgcgagaaCAGCCGCCGGccgGAggcCGAg -3'
miRNA:   3'- cCGGUGGGg------GUCGGCGGCCaa-CU---GCU- -5'
23777 5' -62.2 NC_005261.1 + 103907 0.74 0.231396
Target:  5'- gGGCCACCCgC-GCCGCCaGGUcgGGCGc -3'
miRNA:   3'- -CCGGUGGGgGuCGGCGG-CCAa-CUGCu -5'
23777 5' -62.2 NC_005261.1 + 103575 0.66 0.602626
Target:  5'- cGCCGCCgCCCGcgccgucgcucGCCGCCGuGgccgcGGCGGc -3'
miRNA:   3'- cCGGUGG-GGGU-----------CGGCGGC-Caa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 102538 0.69 0.470113
Target:  5'- uGGCCGCcugcggCCCCAGgCGCCcGGcgGACa- -3'
miRNA:   3'- -CCGGUG------GGGGUCgGCGG-CCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 102433 0.69 0.470113
Target:  5'- cGGCCGCCUCCucggcgcGCCGCcCGGccucGGCGc -3'
miRNA:   3'- -CCGGUGGGGGu------CGGCG-GCCaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 101457 0.7 0.377173
Target:  5'- cGCUGgCCCCAgcGCCGCCGGc-GGCGGc -3'
miRNA:   3'- cCGGUgGGGGU--CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 100383 0.73 0.248078
Target:  5'- aGGCCGCCUCCAccacGCCGCC-GUUGuccaGCGGg -3'
miRNA:   3'- -CCGGUGGGGGU----CGGCGGcCAAC----UGCU- -5'
23777 5' -62.2 NC_005261.1 + 100255 0.74 0.24241
Target:  5'- uGCCAgCCCCCAGUcggcgCGCCGGU-GGCGc -3'
miRNA:   3'- cCGGU-GGGGGUCG-----GCGGCCAaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 99780 0.69 0.470113
Target:  5'- aGGCgGCCCgggucCCAGUCGCggcgCGGaUGGCGAa -3'
miRNA:   3'- -CCGgUGGG-----GGUCGGCG----GCCaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 98774 0.77 0.153946
Target:  5'- uGCCGCCgCCGGCCGCCGGccgcgcgUG-CGAa -3'
miRNA:   3'- cCGGUGGgGGUCGGCGGCCa------ACuGCU- -5'
23777 5' -62.2 NC_005261.1 + 98334 0.67 0.592848
Target:  5'- cGGCgCGCCCCguGUCGaCGcGggGGCGGg -3'
miRNA:   3'- -CCG-GUGGGGguCGGCgGC-CaaCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.