miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 98159 0.68 0.503922
Target:  5'- aGGCCGCgggcggcgggugugUCCUuggAGCCGCCGGggGcGCGGc -3'
miRNA:   3'- -CCGGUG--------------GGGG---UCGGCGGCCaaC-UGCU- -5'
23777 5' -62.2 NC_005261.1 + 97937 0.68 0.516052
Target:  5'- uGGCCGCCagcuCCGGCgGCaacgaGGgaggUGGCGGc -3'
miRNA:   3'- -CCGGUGGg---GGUCGgCGg----CCa---ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 97772 0.67 0.562729
Target:  5'- cGGCCggcaucgACUCCCgAGCC-CCGGgccGGCGAc -3'
miRNA:   3'- -CCGG-------UGGGGG-UCGGcGGCCaa-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 97027 0.72 0.322707
Target:  5'- cGGgCGCgCCCGGCCGCCcacauccacagggcGGggGGCGGc -3'
miRNA:   3'- -CCgGUGgGGGUCGGCGG--------------CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 96470 0.69 0.452325
Target:  5'- aGGCCGCgCUCC-GCgGCUGGgggUGAUGGg -3'
miRNA:   3'- -CCGGUG-GGGGuCGgCGGCCa--ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 95747 0.72 0.310896
Target:  5'- cGCCGCCgCC-GCCGCCGGg-GGCGc -3'
miRNA:   3'- cCGGUGGgGGuCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 94308 0.67 0.563695
Target:  5'- cGGCgACCCaggggggcgCCAGCCcgaacucgcGCCGGUaGGCGu -3'
miRNA:   3'- -CCGgUGGG---------GGUCGG---------CGGCCAaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 94051 0.69 0.470113
Target:  5'- cGCC-CCCCCAGCggCGCCGGgagcaGAa -3'
miRNA:   3'- cCGGuGGGGGUCG--GCGGCCaacugCU- -5'
23777 5' -62.2 NC_005261.1 + 93949 0.66 0.651688
Target:  5'- cGCCGCCUCCgGGCgGUCGGccGuCGAc -3'
miRNA:   3'- cCGGUGGGGG-UCGgCGGCCaaCuGCU- -5'
23777 5' -62.2 NC_005261.1 + 93822 0.82 0.070469
Target:  5'- cGCCACCgCCgCAGCCGCCGGgcGGCGc -3'
miRNA:   3'- cCGGUGG-GG-GUCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 92179 0.66 0.651688
Target:  5'- aGCCGCCgggCCCGacGCCGCCGc-UGGCGc -3'
miRNA:   3'- cCGGUGG---GGGU--CGGCGGCcaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 91494 0.68 0.534936
Target:  5'- cGGCCGCCgCCCGccccgcgcGCCuGCUGGUcucgGACa- -3'
miRNA:   3'- -CCGGUGG-GGGU--------CGG-CGGCCAa---CUGcu -5'
23777 5' -62.2 NC_005261.1 + 91134 0.66 0.612425
Target:  5'- cGGCCGaggCCUCAGCCguGCCGcccGGCGAg -3'
miRNA:   3'- -CCGGUg--GGGGUCGG--CGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 88341 0.66 0.641876
Target:  5'- uGGCgGCgCCCC-GCCGCCGc--GGCGu -3'
miRNA:   3'- -CCGgUG-GGGGuCGGCGGCcaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 88143 0.7 0.401283
Target:  5'- cGCCGCgcgggggcgCCCCGGCCgcgcaGCCGGgccggGGCGAc -3'
miRNA:   3'- cCGGUG---------GGGGUCGG-----CGGCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 87952 0.67 0.544469
Target:  5'- cGCCGCCa-CGGcCCGCCGGc-GGCGGg -3'
miRNA:   3'- cCGGUGGggGUC-GGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 87794 0.68 0.50671
Target:  5'- uGGCCGCCgcgUCCauGGCCGgCGGggcuggGACGGg -3'
miRNA:   3'- -CCGGUGG---GGG--UCGGCgGCCaa----CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 87573 0.66 0.645802
Target:  5'- cGUCAgCCCCGcGCCGCCcaggccgguggucuuGGUgccGGCGAc -3'
miRNA:   3'- cCGGUgGGGGU-CGGCGG---------------CCAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 86834 0.67 0.572406
Target:  5'- cGGCCGCCaucaccgaggCCAgccggcgcucaacGCCGCCGGgcgcGGCGGc -3'
miRNA:   3'- -CCGGUGGg---------GGU-------------CGGCGGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 85132 0.66 0.651688
Target:  5'- cGGCCACguugCCCGG-CGUgaGGUUGACGu -3'
miRNA:   3'- -CCGGUGg---GGGUCgGCGg-CCAACUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.