miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 85032 0.69 0.43405
Target:  5'- cGCCGCgCCCCGGCCacgaucgccgugaGCCcGUUGAUGu -3'
miRNA:   3'- cCGGUG-GGGGUCGG-------------CGGcCAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 84587 0.66 0.622238
Target:  5'- cGGCCGUCUgcgCCAGCgCGCCGuugcugccGUUGAUGAu -3'
miRNA:   3'- -CCGGUGGG---GGUCG-GCGGC--------CAACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 83847 0.67 0.592848
Target:  5'- gGGCCGCggCCCCgcugGGCUggGCCGGgccgGACGc -3'
miRNA:   3'- -CCGGUG--GGGG----UCGG--CGGCCaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 83188 0.7 0.385101
Target:  5'- uGCgCACCCgCAGCUGCCGcgUGACGu -3'
miRNA:   3'- cCG-GUGGGgGUCGGCGGCcaACUGCu -5'
23777 5' -62.2 NC_005261.1 + 83117 0.68 0.534936
Target:  5'- cGCCGCCgCCAGCCGCgCGcgcGGCa- -3'
miRNA:   3'- cCGGUGGgGGUCGGCG-GCcaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 82996 0.66 0.611445
Target:  5'- cGGCCGCCucgcgcaCCgAGCCGCCGucgccGGCGc -3'
miRNA:   3'- -CCGGUGG-------GGgUCGGCGGCcaa--CUGCu -5'
23777 5' -62.2 NC_005261.1 + 82445 0.72 0.324826
Target:  5'- cGGCCGgCCCCGcGCCGCC-GUUGcCGc -3'
miRNA:   3'- -CCGGUgGGGGU-CGGCGGcCAACuGCu -5'
23777 5' -62.2 NC_005261.1 + 81822 0.67 0.592848
Target:  5'- cGGUgACgCCCCGcGCCGCgCGGaUG-CGAa -3'
miRNA:   3'- -CCGgUG-GGGGU-CGGCG-GCCaACuGCU- -5'
23777 5' -62.2 NC_005261.1 + 78850 0.7 0.385101
Target:  5'- cGGCgGCgCCC-GCCGCCGGagcGCGAg -3'
miRNA:   3'- -CCGgUGgGGGuCGGCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 78132 0.7 0.382711
Target:  5'- cGCCACCCCCGccgccccggcgcccGCCGCUGcc-GGCGGg -3'
miRNA:   3'- cCGGUGGGGGU--------------CGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 78033 0.68 0.497442
Target:  5'- cGCCGCuccgCCCCAGCCGgUGGUc-GCGGg -3'
miRNA:   3'- cCGGUG----GGGGUCGGCgGCCAacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 77717 0.69 0.43405
Target:  5'- cGCCGCCCcCCAGCCaagcggcGCCGGU--ACa- -3'
miRNA:   3'- cCGGUGGG-GGUCGG-------CGGCCAacUGcu -5'
23777 5' -62.2 NC_005261.1 + 77385 0.73 0.259744
Target:  5'- cGGCgCACCCCCuGCCGgCCGGc-GACu- -3'
miRNA:   3'- -CCG-GUGGGGGuCGGC-GGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 76409 0.74 0.231396
Target:  5'- cGGCCGgCCCCGGCgcgugcagagCGCCGGcgccaUGGCGGa -3'
miRNA:   3'- -CCGGUgGGGGUCG----------GCGGCCa----ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 76214 0.68 0.47914
Target:  5'- aGCCGCgCCUGcGCCGCgCGcUUGACGAg -3'
miRNA:   3'- cCGGUGgGGGU-CGGCG-GCcAACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 75561 0.77 0.1395
Target:  5'- cGGCCAUCCCCgGGgCGCUGGgcGGCGGc -3'
miRNA:   3'- -CCGGUGGGGG-UCgGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 75460 0.76 0.165657
Target:  5'- gGGCCAgUUCCAGgCGCCGGgcGGCGGc -3'
miRNA:   3'- -CCGGUgGGGGUCgGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 74901 0.71 0.369357
Target:  5'- cGGCgGCCCgcgCUGGCCGCgCGGgggagGGCGAg -3'
miRNA:   3'- -CCGgUGGG---GGUCGGCG-GCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 74466 0.71 0.346579
Target:  5'- cGCCGCCCCCGGCgCGgCGuGccugGGCGGg -3'
miRNA:   3'- cCGGUGGGGGUCG-GCgGC-Caa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 74015 0.67 0.563695
Target:  5'- cGGCCaacaugaacacGCCCagcaagauggaCCAGCgCGCCGGggGGCu- -3'
miRNA:   3'- -CCGG-----------UGGG-----------GGUCG-GCGGCCaaCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.