miRNA display CGI


Results 101 - 120 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 74901 0.71 0.369357
Target:  5'- cGGCgGCCCgcgCUGGCCGCgCGGgggagGGCGAg -3'
miRNA:   3'- -CCGgUGGG---GGUCGGCG-GCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 70368 0.7 0.377173
Target:  5'- cGGCgCGCCUCCAcggcGCCGCUGGccGACa- -3'
miRNA:   3'- -CCG-GUGGGGGU----CGGCGGCCaaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 101457 0.7 0.377173
Target:  5'- cGCUGgCCCCAgcGCCGCCGGc-GGCGGc -3'
miRNA:   3'- cCGGUgGGGGU--CGGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 5252 0.7 0.377173
Target:  5'- uGGCCGgCUCguGcCCGCCGGgaGACGc -3'
miRNA:   3'- -CCGGUgGGGguC-GGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 16321 0.7 0.377173
Target:  5'- gGGCCcuCCCCCucGCCGCCGGUc----- -3'
miRNA:   3'- -CCGGu-GGGGGu-CGGCGGCCAacugcu -5'
23777 5' -62.2 NC_005261.1 + 130303 0.71 0.345097
Target:  5'- aGCCACCCaaCCAGCCGCUGcagcgccaugGACGGc -3'
miRNA:   3'- cCGGUGGG--GGUCGGCGGCcaa-------CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 118618 0.71 0.339214
Target:  5'- cGGCCGuugCCCUGGCCGCCGcGgcGGCGc -3'
miRNA:   3'- -CCGGUg--GGGGUCGGCGGC-CaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 66222 0.72 0.290863
Target:  5'- cGCCGCCCagCAGCCGCUGcUUGAUGc -3'
miRNA:   3'- cCGGUGGGg-GUCGGCGGCcAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 21200 0.72 0.302088
Target:  5'- cGGCCGCggacgcuggCCCCGGCCGCgacggcgggcccguCGGcUGGCGGc -3'
miRNA:   3'- -CCGGUG---------GGGGUCGGCG--------------GCCaACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 60239 0.72 0.310896
Target:  5'- gGGCCGCCUCC-GCCGCggCGGgagcGGCGGc -3'
miRNA:   3'- -CCGGUGGGGGuCGGCG--GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 107756 0.72 0.310896
Target:  5'- gGGCCACgCCCCAGCgcuCGCUGGcgcGCGGu -3'
miRNA:   3'- -CCGGUG-GGGGUCG---GCGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 95747 0.72 0.310896
Target:  5'- cGCCGCCgCC-GCCGCCGGg-GGCGc -3'
miRNA:   3'- cCGGUGGgGGuCGGCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 97027 0.72 0.322707
Target:  5'- cGGgCGCgCCCGGCCGCCcacauccacagggcGGggGGCGGc -3'
miRNA:   3'- -CCgGUGgGGGUCGGCGG--------------CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 21793 0.72 0.324826
Target:  5'- gGGCCGCCg-CAGCCGCCGGccgGGCc- -3'
miRNA:   3'- -CCGGUGGggGUCGGCGGCCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 82445 0.72 0.324826
Target:  5'- cGGCCGgCCCCGcGCCGCC-GUUGcCGc -3'
miRNA:   3'- -CCGGUgGGGGU-CGGCGGcCAACuGCu -5'
23777 5' -62.2 NC_005261.1 + 104361 0.72 0.324826
Target:  5'- cGCCGCCCgcgagaaCAGCCGCCGGccgGAggcCGAg -3'
miRNA:   3'- cCGGUGGGg------GUCGGCGGCCaa-CU---GCU- -5'
23777 5' -62.2 NC_005261.1 + 39365 0.71 0.331962
Target:  5'- aGCCGCCUcaUCGGCgGCCGGggagGGCGGc -3'
miRNA:   3'- cCGGUGGG--GGUCGgCGGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 121620 0.71 0.331962
Target:  5'- cGCCGCCUCCcgccgcucggcGGCCGCCGcc-GGCGAg -3'
miRNA:   3'- cCGGUGGGGG-----------UCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 31733 0.71 0.339214
Target:  5'- uGGCCGCgcgauggCCCGGCCGUCGGgcaGGCGc -3'
miRNA:   3'- -CCGGUGg------GGGUCGGCGGCCaa-CUGCu -5'
23777 5' -62.2 NC_005261.1 + 4293 0.71 0.339214
Target:  5'- cGGCCgcggGCCCCgCGGCCGCCGcGUaGcgcGCGGc -3'
miRNA:   3'- -CCGG----UGGGG-GUCGGCGGC-CAaC---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.