miRNA display CGI


Results 121 - 140 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 43418 0.7 0.393138
Target:  5'- gGGCgGCCUCC-GCCGCCGGc-GGgGAg -3'
miRNA:   3'- -CCGgUGGGGGuCGGCGGCCaaCUgCU- -5'
23777 5' -62.2 NC_005261.1 + 70819 0.7 0.393138
Target:  5'- cGGCgGCCCCgGGCgCGCCGGcgcGCGc -3'
miRNA:   3'- -CCGgUGGGGgUCG-GCGGCCaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 67491 0.71 0.369357
Target:  5'- cGGCCGCCgCCAGCCGCgCGuaGUaGGCc- -3'
miRNA:   3'- -CCGGUGGgGGUCGGCG-GC--CAaCUGcu -5'
23777 5' -62.2 NC_005261.1 + 19793 0.71 0.369357
Target:  5'- cGGCC-CUCCgagccggggguCAGCCGCCGGUcGAUGc -3'
miRNA:   3'- -CCGGuGGGG-----------GUCGGCGGCCAaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 69288 0.71 0.361651
Target:  5'- cGCCGaCCCCGGCgcggggCGCCGGUggcGGCGGg -3'
miRNA:   3'- cCGGUgGGGGUCG------GCGGCCAa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 97027 0.72 0.322707
Target:  5'- cGGgCGCgCCCGGCCGCCcacauccacagggcGGggGGCGGc -3'
miRNA:   3'- -CCgGUGgGGGUCGGCGG--------------CCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 21793 0.72 0.324826
Target:  5'- gGGCCGCCg-CAGCCGCCGGccgGGCc- -3'
miRNA:   3'- -CCGGUGGggGUCGGCGGCCaa-CUGcu -5'
23777 5' -62.2 NC_005261.1 + 82445 0.72 0.324826
Target:  5'- cGGCCGgCCCCGcGCCGCC-GUUGcCGc -3'
miRNA:   3'- -CCGGUgGGGGU-CGGCGGcCAACuGCu -5'
23777 5' -62.2 NC_005261.1 + 104361 0.72 0.324826
Target:  5'- cGCCGCCCgcgagaaCAGCCGCCGGccgGAggcCGAg -3'
miRNA:   3'- cCGGUGGGg------GUCGGCGGCCaa-CU---GCU- -5'
23777 5' -62.2 NC_005261.1 + 39365 0.71 0.331962
Target:  5'- aGCCGCCUcaUCGGCgGCCGGggagGGCGGc -3'
miRNA:   3'- cCGGUGGG--GGUCGgCGGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 121620 0.71 0.331962
Target:  5'- cGCCGCCUCCcgccgcucggcGGCCGCCGcc-GGCGAg -3'
miRNA:   3'- cCGGUGGGGG-----------UCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 31733 0.71 0.339214
Target:  5'- uGGCCGCgcgauggCCCGGCCGUCGGgcaGGCGc -3'
miRNA:   3'- -CCGGUGg------GGGUCGGCGGCCaa-CUGCu -5'
23777 5' -62.2 NC_005261.1 + 4293 0.71 0.339214
Target:  5'- cGGCCgcggGCCCCgCGGCCGCCGcGUaGcgcGCGGc -3'
miRNA:   3'- -CCGG----UGGGG-GUCGGCGGC-CAaC---UGCU- -5'
23777 5' -62.2 NC_005261.1 + 118618 0.71 0.339214
Target:  5'- cGGCCGuugCCCUGGCCGCCGcGgcGGCGc -3'
miRNA:   3'- -CCGGUg--GGGGUCGGCGGC-CaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 130303 0.71 0.345097
Target:  5'- aGCCACCCaaCCAGCCGCUGcagcgccaugGACGGc -3'
miRNA:   3'- cCGGUGGG--GGUCGGCGGCcaa-------CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 126492 0.71 0.346579
Target:  5'- cGCCGCCaCCAGCUGCCGca-GGCGGu -3'
miRNA:   3'- cCGGUGGgGGUCGGCGGCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 74466 0.71 0.346579
Target:  5'- cGCCGCCCCCGGCgCGgCGuGccugGGCGGg -3'
miRNA:   3'- cCGGUGGGGGUCG-GCgGC-Caa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 72125 0.71 0.354059
Target:  5'- aGGCCACCCCgaagAGCC-CCGGgu-GCGAc -3'
miRNA:   3'- -CCGGUGGGGg---UCGGcGGCCaacUGCU- -5'
23777 5' -62.2 NC_005261.1 + 35678 0.71 0.357082
Target:  5'- cGGCCGCaCCCCcGCCggcgagccccgguggGCCGGgggcucggUGGCGGc -3'
miRNA:   3'- -CCGGUG-GGGGuCGG---------------CGGCCa-------ACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 3517 0.71 0.361651
Target:  5'- cGGCCGCCUCCAGCgCGgCGGccgccucGGCGc -3'
miRNA:   3'- -CCGGUGGGGGUCG-GCgGCCaa-----CUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.