Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23777 | 5' | -62.2 | NC_005261.1 | + | 31733 | 0.71 | 0.339214 |
Target: 5'- uGGCCGCgcgauggCCCGGCCGUCGGgcaGGCGc -3' miRNA: 3'- -CCGGUGg------GGGUCGGCGGCCaa-CUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 4293 | 0.71 | 0.339214 |
Target: 5'- cGGCCgcggGCCCCgCGGCCGCCGcGUaGcgcGCGGc -3' miRNA: 3'- -CCGG----UGGGG-GUCGGCGGC-CAaC---UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 118618 | 0.71 | 0.339214 |
Target: 5'- cGGCCGuugCCCUGGCCGCCGcGgcGGCGc -3' miRNA: 3'- -CCGGUg--GGGGUCGGCGGC-CaaCUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 130303 | 0.71 | 0.345097 |
Target: 5'- aGCCACCCaaCCAGCCGCUGcagcgccaugGACGGc -3' miRNA: 3'- cCGGUGGG--GGUCGGCGGCcaa-------CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 126492 | 0.71 | 0.346579 |
Target: 5'- cGCCGCCaCCAGCUGCCGca-GGCGGu -3' miRNA: 3'- cCGGUGGgGGUCGGCGGCcaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 74466 | 0.71 | 0.346579 |
Target: 5'- cGCCGCCCCCGGCgCGgCGuGccugGGCGGg -3' miRNA: 3'- cCGGUGGGGGUCG-GCgGC-Caa--CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 72125 | 0.71 | 0.354059 |
Target: 5'- aGGCCACCCCgaagAGCC-CCGGgu-GCGAc -3' miRNA: 3'- -CCGGUGGGGg---UCGGcGGCCaacUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 82445 | 0.72 | 0.324826 |
Target: 5'- cGGCCGgCCCCGcGCCGCC-GUUGcCGc -3' miRNA: 3'- -CCGGUgGGGGU-CGGCGGcCAACuGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 21793 | 0.72 | 0.324826 |
Target: 5'- gGGCCGCCg-CAGCCGCCGGccgGGCc- -3' miRNA: 3'- -CCGGUGGggGUCGGCGGCCaa-CUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 97027 | 0.72 | 0.322707 |
Target: 5'- cGGgCGCgCCCGGCCGCCcacauccacagggcGGggGGCGGc -3' miRNA: 3'- -CCgGUGgGGGUCGGCGG--------------CCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 71999 | 0.73 | 0.278077 |
Target: 5'- cGUCGCCCCUGGCCuuaacGCCGGg-GGCGAc -3' miRNA: 3'- cCGGUGGGGGUCGG-----CGGCCaaCUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 124899 | 0.73 | 0.278077 |
Target: 5'- uGGCCGCCCCC-GCCGCCacgcGGgaagccGCGGa -3' miRNA: 3'- -CCGGUGGGGGuCGGCGG----CCaac---UGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 67776 | 0.72 | 0.2825 |
Target: 5'- cGCCGCCCCCGGCCGCCcccuccuccgccucGGcgccgcccagUGGCa- -3' miRNA: 3'- cCGGUGGGGGUCGGCGG--------------CCa---------ACUGcu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 111650 | 0.72 | 0.283774 |
Target: 5'- cGCCGCCuCCCAGCCcucccgcGCCGcGgUGGCGGc -3' miRNA: 3'- cCGGUGG-GGGUCGG-------CGGC-CaACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 59939 | 0.72 | 0.290863 |
Target: 5'- cGGCCAUCUCCAGCCGCagcgCGGcgcgcgUGAaCGGg -3' miRNA: 3'- -CCGGUGGGGGUCGGCG----GCCa-----ACU-GCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 66222 | 0.72 | 0.290863 |
Target: 5'- cGCCGCCCagCAGCCGCUGcUUGAUGc -3' miRNA: 3'- cCGGUGGGg-GUCGGCGGCcAACUGCu -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 21200 | 0.72 | 0.302088 |
Target: 5'- cGGCCGCggacgcuggCCCCGGCCGCgacggcgggcccguCGGcUGGCGGc -3' miRNA: 3'- -CCGGUG---------GGGGUCGGCG--------------GCCaACUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 60239 | 0.72 | 0.310896 |
Target: 5'- gGGCCGCCUCC-GCCGCggCGGgagcGGCGGc -3' miRNA: 3'- -CCGGUGGGGGuCGGCG--GCCaa--CUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 107756 | 0.72 | 0.310896 |
Target: 5'- gGGCCACgCCCCAGCgcuCGCUGGcgcGCGGu -3' miRNA: 3'- -CCGGUG-GGGGUCG---GCGGCCaacUGCU- -5' |
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23777 | 5' | -62.2 | NC_005261.1 | + | 95747 | 0.72 | 0.310896 |
Target: 5'- cGCCGCCgCC-GCCGCCGGg-GGCGc -3' miRNA: 3'- cCGGUGGgGGuCGGCGGCCaaCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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