miRNA display CGI


Results 21 - 40 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23777 5' -62.2 NC_005261.1 + 131806 0.66 0.640894
Target:  5'- cGCCGCgCCUGacggcgcGCCGCCGcUUGACGc -3'
miRNA:   3'- cCGGUGgGGGU-------CGGCGGCcAACUGCu -5'
23777 5' -62.2 NC_005261.1 + 24110 0.66 0.632057
Target:  5'- -cCCACCCCgGGCCcgaGgCGGggGugGGg -3'
miRNA:   3'- ccGGUGGGGgUCGG---CgGCCaaCugCU- -5'
23777 5' -62.2 NC_005261.1 + 128 0.66 0.632057
Target:  5'- cGCCGCCCCUGGUgcuCGCgGGgcUGGCa- -3'
miRNA:   3'- cCGGUGGGGGUCG---GCGgCCa-ACUGcu -5'
23777 5' -62.2 NC_005261.1 + 23611 0.66 0.632057
Target:  5'- uGUCGCCgCC-GCUGCCGGggcgcGGCGGg -3'
miRNA:   3'- cCGGUGGgGGuCGGCGGCCaa---CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 67311 0.66 0.632057
Target:  5'- cGCCGCCgUCGGCCGCCGcc--GCGc -3'
miRNA:   3'- cCGGUGGgGGUCGGCGGCcaacUGCu -5'
23777 5' -62.2 NC_005261.1 + 71002 0.66 0.632057
Target:  5'- cGGCCGCCaggCCAGCuCGCCGcGcaggaaGGCGu -3'
miRNA:   3'- -CCGGUGGg--GGUCG-GCGGC-Caa----CUGCu -5'
23777 5' -62.2 NC_005261.1 + 137811 0.66 0.632057
Target:  5'- cGCCGCCCCUGGUgcuCGCgGGgcUGGCa- -3'
miRNA:   3'- cCGGUGGGGGUCG---GCGgCCa-ACUGcu -5'
23777 5' -62.2 NC_005261.1 + 13072 0.66 0.632057
Target:  5'- gGGCgCGuCCgCCGGcCCGUCGGcgGGCGGc -3'
miRNA:   3'- -CCG-GU-GGgGGUC-GGCGGCCaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 30773 0.66 0.632057
Target:  5'- gGGCCGgagCCCGGCCGC-GGcgGugGAg -3'
miRNA:   3'- -CCGGUgg-GGGUCGGCGgCCaaCugCU- -5'
23777 5' -62.2 NC_005261.1 + 43818 0.66 0.632057
Target:  5'- gGGCgCGCCCUCcguggagaAGCUGCuCGGcgagGGCGAg -3'
miRNA:   3'- -CCG-GUGGGGG--------UCGGCG-GCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 49189 0.66 0.632057
Target:  5'- cGGCCagGCCCUCGGCCGacagCGag-GGCGGg -3'
miRNA:   3'- -CCGG--UGGGGGUCGGCg---GCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 134713 0.66 0.622238
Target:  5'- cGGCgCGCCcagaCCCGGCCGggacCCGGacucGGCGAc -3'
miRNA:   3'- -CCG-GUGG----GGGUCGGC----GGCCaa--CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 33456 0.66 0.622238
Target:  5'- aGCCGCCgCCgCAGCCGCCGccgcaGcCGGg -3'
miRNA:   3'- cCGGUGG-GG-GUCGGCGGCcaa--CuGCU- -5'
23777 5' -62.2 NC_005261.1 + 33811 0.66 0.622238
Target:  5'- gGGCUugUCUUugGGCgGCCGGggGGCGc -3'
miRNA:   3'- -CCGGugGGGG--UCGgCGGCCaaCUGCu -5'
23777 5' -62.2 NC_005261.1 + 3385 0.66 0.622238
Target:  5'- cGGCCGCCagccgcgCCGGCacuucCGCCGGcgGGCuGAa -3'
miRNA:   3'- -CCGGUGGg------GGUCG-----GCGGCCaaCUG-CU- -5'
23777 5' -62.2 NC_005261.1 + 84587 0.66 0.622238
Target:  5'- cGGCCGUCUgcgCCAGCgCGCCGuugcugccGUUGAUGAu -3'
miRNA:   3'- -CCGGUGGG---GGUCG-GCGGC--------CAACUGCU- -5'
23777 5' -62.2 NC_005261.1 + 117369 0.66 0.622238
Target:  5'- aGGCCGCCCUCcuggaGGCgCGCUGcUUcGGCGGg -3'
miRNA:   3'- -CCGGUGGGGG-----UCG-GCGGCcAA-CUGCU- -5'
23777 5' -62.2 NC_005261.1 + 55166 0.66 0.622238
Target:  5'- cGCCGCCgCCGGCgGCuCGcggGGCGGa -3'
miRNA:   3'- cCGGUGGgGGUCGgCG-GCcaaCUGCU- -5'
23777 5' -62.2 NC_005261.1 + 9870 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5'
23777 5' -62.2 NC_005261.1 + 9927 0.66 0.620274
Target:  5'- cGGCCugCCCCGGCgagcccacccuaGCCGGcccgcccggGGCa- -3'
miRNA:   3'- -CCGGugGGGGUCGg-----------CGGCCaa-------CUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.