miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 23807 0.66 0.738509
Target:  5'- gCCGgcuGgGGCgGGCU-UGCCCCGGg -3'
miRNA:   3'- gGGCau-CgUCGaCCGGuACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 23864 0.66 0.738509
Target:  5'- gCCGgcuGgGGCgGGCU-UGCCCCGGg -3'
miRNA:   3'- gGGCau-CgUCGaCCGGuACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 85727 0.66 0.738509
Target:  5'- gCCGUGGCacuGGCUGagcGCCAaguccUGCaCCaCGGCc -3'
miRNA:   3'- gGGCAUCG---UCGAC---CGGU-----ACG-GG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 15172 0.66 0.738509
Target:  5'- -gCGUAGCGGC-GGCgGcGCCCgCGGg -3'
miRNA:   3'- ggGCAUCGUCGaCCGgUaCGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 77561 0.66 0.738509
Target:  5'- gCCGccAGUGGCgccGCCGcGCCCUGGCa -3'
miRNA:   3'- gGGCa-UCGUCGac-CGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 103619 0.66 0.738509
Target:  5'- gCgCGggaGGCGGCggcGGCCAUcGCCUCgaAGCg -3'
miRNA:   3'- -GgGCa--UCGUCGa--CCGGUA-CGGGG--UCG- -5'
23778 3' -59.8 NC_005261.1 + 89943 0.66 0.738509
Target:  5'- gCgGUGGCgcGGCUGGCCgggaucacaGUGCCgCGcGCc -3'
miRNA:   3'- gGgCAUCG--UCGACCGG---------UACGGgGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 73354 0.66 0.738509
Target:  5'- gCCCGgcGcCGGCUcaGGCg--GCgCCAGCa -3'
miRNA:   3'- -GGGCauC-GUCGA--CCGguaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 135067 0.66 0.738509
Target:  5'- gCCCGccgcuuuccGGCGGCgGGCuCGcGgCCCGGCg -3'
miRNA:   3'- -GGGCa--------UCGUCGaCCG-GUaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 74812 0.66 0.738509
Target:  5'- cCCgCGUGGCGGaggUGGCCGccgUGCUCgCGGa -3'
miRNA:   3'- -GG-GCAUCGUCg--ACCGGU---ACGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 74061 0.66 0.738509
Target:  5'- gCUGcGGCAGCUgcgcgacgcGGCCcgGCUUguGCg -3'
miRNA:   3'- gGGCaUCGUCGA---------CCGGuaCGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 136494 0.66 0.738509
Target:  5'- -gCG-AGCAGCUcgGcGCCGacgccUGCUCCGGCg -3'
miRNA:   3'- ggGCaUCGUCGA--C-CGGU-----ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 21234 0.66 0.738509
Target:  5'- gCCCGUcggcuGGCGGCUuuucaGGgCGUGCCgCAacgaGCa -3'
miRNA:   3'- -GGGCA-----UCGUCGA-----CCgGUACGGgGU----CG- -5'
23778 3' -59.8 NC_005261.1 + 1641 0.66 0.732723
Target:  5'- cCCCG-AGCcccAGCgccgcgcucugcgcGGCCAUGUCCUuGCg -3'
miRNA:   3'- -GGGCaUCG---UCGa-------------CCGGUACGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 99725 0.66 0.728849
Target:  5'- gCgCGUGGCcGCgucaGGCgCGUGCCgccacacggCCAGCa -3'
miRNA:   3'- -GgGCAUCGuCGa---CCG-GUACGG---------GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 115493 0.66 0.728849
Target:  5'- gCCGcGGCGGC-GcGCCGcaGCCCCcGCa -3'
miRNA:   3'- gGGCaUCGUCGaC-CGGUa-CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 97546 0.66 0.728849
Target:  5'- cCCCGgcGguGCcGGCCcguccGCCCgGGg -3'
miRNA:   3'- -GGGCauCguCGaCCGGua---CGGGgUCg -5'
23778 3' -59.8 NC_005261.1 + 85014 0.66 0.728849
Target:  5'- gCCGcggGGUcGCgcGGCCGccgcGCCCCGGCc -3'
miRNA:   3'- gGGCa--UCGuCGa-CCGGUa---CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 113887 0.66 0.728849
Target:  5'- aCCUGUAGCGGCgacgcggcgGGCgCGaugGCCgaGGCa -3'
miRNA:   3'- -GGGCAUCGUCGa--------CCG-GUa--CGGggUCG- -5'
23778 3' -59.8 NC_005261.1 + 20021 0.66 0.728849
Target:  5'- aCCCGUccgcGGuCAGCgGGCCGguuCCguCCGGCg -3'
miRNA:   3'- -GGGCA----UC-GUCGaCCGGUac-GG--GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.