miRNA display CGI


Results 1 - 20 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 135067 0.66 0.738509
Target:  5'- gCCCGccgcuuuccGGCGGCgGGCuCGcGgCCCGGCg -3'
miRNA:   3'- -GGGCa--------UCGUCGaCCG-GUaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 108195 0.66 0.689483
Target:  5'- uCCgGgcGCgagAGCUGcGCCAgcacggcgcGCUCCAGCa -3'
miRNA:   3'- -GGgCauCG---UCGAC-CGGUa--------CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 118052 0.66 0.689483
Target:  5'- gCCCGcgcUGGCGGCcgcGGCagcgGCCgCAGCc -3'
miRNA:   3'- -GGGC---AUCGUCGa--CCGgua-CGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 45627 0.66 0.699416
Target:  5'- gCgCGgcGCGGCgGGCCcgcgccggagcaGUGC-CCAGCg -3'
miRNA:   3'- -GgGCauCGUCGaCCGG------------UACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 32519 0.66 0.699416
Target:  5'- gUCCGc-GCcGCgcccGGCCccgGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGuCGa---CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36356 0.66 0.689483
Target:  5'- gCCgCGgaggggggAGCGGauCUGGCaCggGCCCCAGUc -3'
miRNA:   3'- -GG-GCa-------UCGUC--GACCG-GuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4443 0.66 0.709293
Target:  5'- -gCGUcAGCAGCgGGCC---CUCCAGCg -3'
miRNA:   3'- ggGCA-UCGUCGaCCGGuacGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 83752 0.66 0.699416
Target:  5'- --gGUGGCGGCgcgccacGGCCggGUCgCAGCg -3'
miRNA:   3'- gggCAUCGUCGa------CCGGuaCGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 114977 0.66 0.708308
Target:  5'- aCgCGUcuuuauuGGCgGGCcGGCCGccgcgGCCCCGGCc -3'
miRNA:   3'- -GgGCA-------UCG-UCGaCCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 52956 0.66 0.699416
Target:  5'- aCUCGgAGCAGCgccGcGCCGgugcgGCgCCGGCa -3'
miRNA:   3'- -GGGCaUCGUCGa--C-CGGUa----CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 85090 0.66 0.709293
Target:  5'- --aGUAGCgcagcaccaGGUUGGCCAuguaaaacUGCgCCAGCu -3'
miRNA:   3'- gggCAUCG---------UCGACCGGU--------ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 123182 0.66 0.689483
Target:  5'- -gCGUGGUGGCUGGUguggGCggaCCCAGCc -3'
miRNA:   3'- ggGCAUCGUCGACCGgua-CG---GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33777 0.66 0.699416
Target:  5'- gCCCGcGGCgAGCgcugGGCCccGCgCgGGCg -3'
miRNA:   3'- -GGGCaUCG-UCGa---CCGGuaCGgGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 48891 0.66 0.699416
Target:  5'- gCCGaacagccGCAGUUGGCCucuagcgcgaGCCCgGGCg -3'
miRNA:   3'- gGGCau-----CGUCGACCGGua--------CGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 109634 0.66 0.689483
Target:  5'- ----aGGCGGCUugcGGCCGccGCCCCAGa -3'
miRNA:   3'- gggcaUCGUCGA---CCGGUa-CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 108905 0.66 0.699416
Target:  5'- gCCGgcgAGCggGGCgcggGGUCggGgCCCAGCa -3'
miRNA:   3'- gGGCa--UCG--UCGa---CCGGuaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4753 0.66 0.699416
Target:  5'- cCCCGgcucgGGCuugGGcCUGGCUucgGCUUCAGCu -3'
miRNA:   3'- -GGGCa----UCG---UC-GACCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 33845 0.66 0.699416
Target:  5'- cCCUGgcGCugGGCgGGCCGggaggGCCCCccGCc -3'
miRNA:   3'- -GGGCauCG--UCGaCCGGUa----CGGGGu-CG- -5'
23778 3' -59.8 NC_005261.1 + 80799 0.66 0.699416
Target:  5'- gCCCGU-GCGGUaGaGCCccGCcgagCCCAGCg -3'
miRNA:   3'- -GGGCAuCGUCGaC-CGGuaCG----GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 12638 0.66 0.689483
Target:  5'- gUCCGgcGCGGUcuggGGCC--GCgCCGGCg -3'
miRNA:   3'- -GGGCauCGUCGa---CCGGuaCGgGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.