miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 4443 0.66 0.709293
Target:  5'- -gCGUcAGCAGCgGGCC---CUCCAGCg -3'
miRNA:   3'- ggGCA-UCGUCGaCCGGuacGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4753 0.66 0.699416
Target:  5'- cCCCGgcucgGGCuugGGcCUGGCUucgGCUUCAGCu -3'
miRNA:   3'- -GGGCa----UCG---UC-GACCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 52956 0.66 0.699416
Target:  5'- aCUCGgAGCAGCgccGcGCCGgugcgGCgCCGGCa -3'
miRNA:   3'- -GGGCaUCGUCGa--C-CGGUa----CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 84140 0.66 0.719107
Target:  5'- gUCGcUGGCGGgcCUcGGCCAcGCCCCuGCc -3'
miRNA:   3'- gGGC-AUCGUC--GA-CCGGUaCGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 33608 0.66 0.709293
Target:  5'- gCCGgcgcgGGCGGCggGGCCcgggggcgcGCCCC-GCa -3'
miRNA:   3'- gGGCa----UCGUCGa-CCGGua-------CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 109634 0.66 0.689483
Target:  5'- ----aGGCGGCUugcGGCCGccGCCCCAGa -3'
miRNA:   3'- gggcaUCGUCGA---CCGGUa-CGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 16257 0.66 0.709293
Target:  5'- gCCGgGGCcGCcggGGCCggGCUUCGGCu -3'
miRNA:   3'- gGGCaUCGuCGa--CCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36356 0.66 0.689483
Target:  5'- gCCgCGgaggggggAGCGGauCUGGCaCggGCCCCAGUc -3'
miRNA:   3'- -GG-GCa-------UCGUC--GACCG-GuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 123182 0.66 0.689483
Target:  5'- -gCGUGGUGGCUGGUguggGCggaCCCAGCc -3'
miRNA:   3'- ggGCAUCGUCGACCGgua-CG---GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 123689 0.66 0.709293
Target:  5'- uCCCGgcGCucAGCgugGGCCGcguacucgGCCaUCAGCa -3'
miRNA:   3'- -GGGCauCG--UCGa--CCGGUa-------CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 32519 0.66 0.699416
Target:  5'- gUCCGc-GCcGCgcccGGCCccgGCCCCGGCc -3'
miRNA:   3'- -GGGCauCGuCGa---CCGGua-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 87555 0.66 0.719107
Target:  5'- gCUgGgcGuCAGCuUGGCCGUcaGCCCCGcGCc -3'
miRNA:   3'- -GGgCauC-GUCG-ACCGGUA--CGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 34345 0.66 0.719107
Target:  5'- gCCGgGGCGGCcgacggGGCCGggcGCCgCgCGGCg -3'
miRNA:   3'- gGGCaUCGUCGa-----CCGGUa--CGG-G-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 83752 0.66 0.699416
Target:  5'- --gGUGGCGGCgcgccacGGCCggGUCgCAGCg -3'
miRNA:   3'- gggCAUCGUCGa------CCGGuaCGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 114977 0.66 0.708308
Target:  5'- aCgCGUcuuuauuGGCgGGCcGGCCGccgcgGCCCCGGCc -3'
miRNA:   3'- -GgGCA-------UCG-UCGaCCGGUa----CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 12638 0.66 0.689483
Target:  5'- gUCCGgcGCGGUcuggGGCC--GCgCCGGCg -3'
miRNA:   3'- -GGGCauCGUCGa---CCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 9801 0.66 0.709293
Target:  5'- gCCCacccCAGCUGGCCcaGC-CCAGCg -3'
miRNA:   3'- -GGGcaucGUCGACCGGuaCGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 50512 0.66 0.719107
Target:  5'- gCCCagccagcGCAGCagGGCCGucgucuUGCCCgAGCc -3'
miRNA:   3'- -GGGcau----CGUCGa-CCGGU------ACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 130998 0.66 0.709293
Target:  5'- aCCCu--GguGCUGGCCAcgcgcuucuacgUGUUCCAGg -3'
miRNA:   3'- -GGGcauCguCGACCGGU------------ACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 135067 0.66 0.738509
Target:  5'- gCCCGccgcuuuccGGCGGCgGGCuCGcGgCCCGGCg -3'
miRNA:   3'- -GGGCa--------UCGUCGaCCG-GUaCgGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.