miRNA display CGI


Results 61 - 80 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 20021 0.66 0.728849
Target:  5'- aCCCGUccgcGGuCAGCgGGCCGguuCCguCCGGCg -3'
miRNA:   3'- -GGGCA----UC-GUCGaCCGGUac-GG--GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 74061 0.66 0.738509
Target:  5'- gCUGcGGCAGCUgcgcgacgcGGCCcgGCUUguGCg -3'
miRNA:   3'- gGGCaUCGUCGA---------CCGGuaCGGGguCG- -5'
23778 3' -59.8 NC_005261.1 + 23807 0.66 0.738509
Target:  5'- gCCGgcuGgGGCgGGCU-UGCCCCGGg -3'
miRNA:   3'- gGGCau-CgUCGaCCGGuACGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 50512 0.66 0.719107
Target:  5'- gCCCagccagcGCAGCagGGCCGucgucuUGCCCgAGCc -3'
miRNA:   3'- -GGGcau----CGUCGa-CCGGU------ACGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 80799 0.66 0.699416
Target:  5'- gCCCGU-GCGGUaGaGCCccGCcgagCCCAGCg -3'
miRNA:   3'- -GGGCAuCGUCGaC-CGGuaCG----GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 37245 0.66 0.727878
Target:  5'- gCgCGUGGaCAGCgcggagaccauccUGGCCgagccGUGCCgCGGCg -3'
miRNA:   3'- -GgGCAUC-GUCG-------------ACCGG-----UACGGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 75524 0.67 0.666477
Target:  5'- gCCGUggucgccgcgcugcAGCGGCUgcgcguccugccGGCCAU-CCCCGGg -3'
miRNA:   3'- gGGCA--------------UCGUCGA------------CCGGUAcGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 106029 0.67 0.629209
Target:  5'- aCCGgaGGCAcgccaccgcGCU-GCCcgGCCCUAGCg -3'
miRNA:   3'- gGGCa-UCGU---------CGAcCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 90374 0.67 0.666477
Target:  5'- gCUCGUGcGCGGCgaGGCCccGCcggcggggcuggcgCCCGGCg -3'
miRNA:   3'- -GGGCAU-CGUCGa-CCGGuaCG--------------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 35981 0.67 0.669488
Target:  5'- gCUGUAGCGGC-GGCg--GCuCCUGGCg -3'
miRNA:   3'- gGGCAUCGUCGaCCGguaCG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 118599 0.67 0.659443
Target:  5'- gCCGcggAGCucgcGCUgucGGCCGuUGCCCUGGCc -3'
miRNA:   3'- gGGCa--UCGu---CGA---CCGGU-ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 77797 0.67 0.629209
Target:  5'- cCCCGgcgagGGCgcgcccgccgAGCU-GCC--GCCCCAGCa -3'
miRNA:   3'- -GGGCa----UCG----------UCGAcCGGuaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 96563 0.67 0.629209
Target:  5'- -gCGUAGC-GCgaauauguccGCCGUGaCCCCGGCg -3'
miRNA:   3'- ggGCAUCGuCGac--------CGGUAC-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 103692 0.67 0.659443
Target:  5'- gCCCGUuuaUAGC-GGCCAcGUcaCCCAGCa -3'
miRNA:   3'- -GGGCAuc-GUCGaCCGGUaCG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 10473 0.67 0.659443
Target:  5'- gCCCG-AGCAgGCcGGCCcgcUGCaCCGGCu -3'
miRNA:   3'- -GGGCaUCGU-CGaCCGGu--ACGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 37636 0.67 0.668485
Target:  5'- gCC-UAGCGGCgcccccaagcccuUGGCCuugGCCCCcgAGCc -3'
miRNA:   3'- gGGcAUCGUCG-------------ACCGGua-CGGGG--UCG- -5'
23778 3' -59.8 NC_005261.1 + 35213 0.67 0.669488
Target:  5'- gCCgggaGUGGCGGCUGGagggGaCCCGGCa -3'
miRNA:   3'- -GGg---CAUCGUCGACCgguaCgGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 36868 0.67 0.659443
Target:  5'- gCCCGccccGCAcGCUGGCCcgcGCCCUuccucgccaaGGCg -3'
miRNA:   3'- -GGGCau--CGU-CGACCGGua-CGGGG----------UCG- -5'
23778 3' -59.8 NC_005261.1 + 31667 0.67 0.669488
Target:  5'- cUCUGccuGCGGCUGGCCGcGgCgCGGCg -3'
miRNA:   3'- -GGGCau-CGUCGACCGGUaCgGgGUCG- -5'
23778 3' -59.8 NC_005261.1 + 65818 0.67 0.659443
Target:  5'- gCCCG-GGCGGC-GGCgCGaagcUGCCCgAGUg -3'
miRNA:   3'- -GGGCaUCGUCGaCCG-GU----ACGGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.