miRNA display CGI


Results 81 - 100 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23778 3' -59.8 NC_005261.1 + 103692 0.67 0.659443
Target:  5'- gCCCGUuuaUAGC-GGCCAcGUcaCCCAGCa -3'
miRNA:   3'- -GGGCAuc-GUCGaCCGGUaCG--GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 118599 0.67 0.659443
Target:  5'- gCCGcggAGCucgcGCUgucGGCCGuUGCCCUGGCc -3'
miRNA:   3'- gGGCa--UCGu---CGA---CCGGU-ACGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 71239 0.67 0.649375
Target:  5'- gCCCucGGCGGCgcaGCCGaGCCCCGcGCc -3'
miRNA:   3'- -GGGcaUCGUCGac-CGGUaCGGGGU-CG- -5'
23778 3' -59.8 NC_005261.1 + 94530 0.67 0.629209
Target:  5'- cCUCG-AGgAGCUGGCCGUucGCCUUcaggAGCg -3'
miRNA:   3'- -GGGCaUCgUCGACCGGUA--CGGGG----UCG- -5'
23778 3' -59.8 NC_005261.1 + 32310 0.67 0.649375
Target:  5'- cCCCGccGCcGCcgcGGCCGcgGCgCCCGGCg -3'
miRNA:   3'- -GGGCauCGuCGa--CCGGUa-CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 88757 0.67 0.65743
Target:  5'- gCCaugGUGGCGGCgcugcgcuccucGGCCcugGCCgCCGGCg -3'
miRNA:   3'- -GGg--CAUCGUCGa-----------CCGGua-CGG-GGUCG- -5'
23778 3' -59.8 NC_005261.1 + 107888 0.67 0.658436
Target:  5'- gCCCGcGGCccGCUuguccgcGGCCGcgGCCUCGGCc -3'
miRNA:   3'- -GGGCaUCGu-CGA-------CCGGUa-CGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 4082 0.67 0.659443
Target:  5'- aCCGgcGGCAGCgGcGCCGUcacGCuCCCGGUg -3'
miRNA:   3'- gGGCa-UCGUCGaC-CGGUA---CG-GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 39195 0.67 0.629209
Target:  5'- cCCCGgcgAGCAGCcGcaccgguagccGCCAUgGCCCUcGCg -3'
miRNA:   3'- -GGGCa--UCGUCGaC-----------CGGUA-CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 36728 0.67 0.635261
Target:  5'- aCCCGggaccGCGGCggucagcuacccaGGCCAgcuggcGCCCCuGCa -3'
miRNA:   3'- -GGGCau---CGUCGa------------CCGGUa-----CGGGGuCG- -5'
23778 3' -59.8 NC_005261.1 + 3835 0.67 0.639295
Target:  5'- gCCCG-GGC-GCUGGCggCAgcgGCgCCGGCg -3'
miRNA:   3'- -GGGCaUCGuCGACCG--GUa--CGgGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 120628 0.67 0.639295
Target:  5'- uCCUGcUGGUGGC-GGCCcuGUGCCUgCGGCg -3'
miRNA:   3'- -GGGC-AUCGUCGaCCGG--UACGGG-GUCG- -5'
23778 3' -59.8 NC_005261.1 + 1303 0.67 0.639295
Target:  5'- uCCCGUcgccGGCGGC-GGCaCGcGCUCCGGg -3'
miRNA:   3'- -GGGCA----UCGUCGaCCG-GUaCGGGGUCg -5'
23778 3' -59.8 NC_005261.1 + 1502 0.67 0.639295
Target:  5'- gCCgCGgccGGCAGCUcgucggGcGCCA-GCUCCAGCg -3'
miRNA:   3'- -GG-GCa--UCGUCGA------C-CGGUaCGGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 90374 0.67 0.666477
Target:  5'- gCUCGUGcGCGGCgaGGCCccGCcggcggggcuggcgCCCGGCg -3'
miRNA:   3'- -GGGCAU-CGUCGa-CCGGuaCG--------------GGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 635 0.67 0.669488
Target:  5'- -aUGUGGCGGC-GGCCGccagcgccgcGuCCCCGGCg -3'
miRNA:   3'- ggGCAUCGUCGaCCGGUa---------C-GGGGUCG- -5'
23778 3' -59.8 NC_005261.1 + 22641 0.67 0.648368
Target:  5'- uCCCGUcccuagacgcgcuGGCGGCgccugGGCgGcGCCCgAGUg -3'
miRNA:   3'- -GGGCA-------------UCGUCGa----CCGgUaCGGGgUCG- -5'
23778 3' -59.8 NC_005261.1 + 76729 0.67 0.649375
Target:  5'- gCCC---GCAGCUGGCCGacgUGCUCgCGGa -3'
miRNA:   3'- -GGGcauCGUCGACCGGU---ACGGG-GUCg -5'
23778 3' -59.8 NC_005261.1 + 104514 0.67 0.649375
Target:  5'- cUCCGUGGCGGCcgcgacggcGGCC--GCCaCCAGg -3'
miRNA:   3'- -GGGCAUCGUCGa--------CCGGuaCGG-GGUCg -5'
23778 3' -59.8 NC_005261.1 + 36781 0.67 0.649375
Target:  5'- gCCCGUGcguuGCGccgagacuuugcGCcGGCCggcgcuacGUGCCCCGGUa -3'
miRNA:   3'- -GGGCAU----CGU------------CGaCCGG--------UACGGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.